Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01219 ATGGCAAAGGCCAGAGAATTATTAAAGTTTGATAAAATTGGGGCTGCAGAAGAGAGAGCTATAAGTGCTTCCAAGAGTCACAGTCAAGCTGAGAAAAGGTGCAGAGACAGCATCAATGCACATCTTGTAACTCTTAGAAAACTTATTCCCGAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCAAGTGAAAGATCTAAAGAGAAAAGCCATGGATGTTAGCAGAGCCTTCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTATGACCATGTTCAAGATGAAAGCTGTACTAAAGTGAACAAATTGAAGAACAATATTGTGATCAAAGCTTCTGTTTGCTGCGATGATTGA 372 0.3925 MAKARELLKFDKIGAAEERAISASKSHSQAEKRCRDSINAHLVTLRKLIPESDKMDKAALLGSVIDQVKDLKRKAMDVSRAFTVPTEIDEVSIDYDHVQDESCTKVNKLKNNIVIKASVCCDD 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01219 123 Pfam Helix-loop-helix DNA-binding domain 25 71 IPR011598 GO:0046983
Pumo7g01219 123 Gene3D - 16 80 IPR036638 GO:0046983
Pumo7g01219 123 SMART finulus 28 77 IPR011598 GO:0046983
Pumo7g01219 123 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 71 IPR011598 GO:0046983
Pumo7g01219 123 PANTHER TRANSCRIPTION FACTOR BHLH30 15 123 IPR045847 GO:0003700|GO:0006355
Pumo7g01219 123 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 74 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01219 Pumo-Chr7 27799554 27815445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01219 18 123 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 52.830 7.05e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g01219 HLH 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01219 - - gmx:100799687 196.823