Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01206 ATGGAAATGAAGGAAAGGCAGCGTTGGAAGGCTGAAGAGGATGCATTGTTATGTGCTTATGTGAGACAGTATGGTCCAAGGGAATGGAATCTTGTGTCTCAGCGCATGAGCACACCTCTCAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCCGGCATCAAGAAAGGGTCTCTAACCGAAGAAGAGCAGCGCCTTGTGATCCGGCTTCAAGCGAAACACGGCAACAAGTGGAAGAAGATTGCTGCAGAAGTTCCAGGCAGAACTGCCAAGAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAAAGGGAGAAGCAAGAGACTAACAAAGCAATTGGACCAGTTGATGACACCAAATATGATCACATACTAGAGACTTTTGCAGAGAAGTTGGTGAAGGAGCACCCTTCACAATCATCATACCTTATGGCTGCTTCTAGTGGAGCCTTTCTCCACATTGATGCACCTGTGCCTGCATCTTTACCTGCACCTGCATCATCATCAGCATTGCTTCCTCCTTGGCTTTCAAATTCTAGCACAACTAATCCCTCATCAGCAATTAGGCCACCTTCTTCCCCTTCTGTGACACTAAGTCTCTCCCCCTCAACAGCACCTCCTCCTTGGTTGCAACCCGAAAGAGGACCGGGGAATGTAACAGCACCTCATGGTGATCATAACATGGTAGTGTCAGAGCTAATAGAGTGCTGTAAGGAGTTGGAAGAAGGGCATCGTGCCTTGGCGGCTCATAGGAAGGAGGCGGCATGGCGATTGAGAAGGGTGGAGCTGCAGTTGGAGGCAGAGAAGGCGAGCCGAAGGAGGGAAAAGATGGAGGAAATTGAAGCAAAGATTAAGGCTATTTGGGAAGAACAGAATGCTGCTTTGGACAGAATTGAAGCAGAATATAGAGAACAGTTAGCAGGATTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAGCAATGGAATGTAAAGCACATGAGGGTAGTGAAGTGTATGAAACAAGTAGGATGTAGAATACCCCGGATTGCTGAGCCTAATGGAAGATAA 1077 0.4763 MEMKERQRWKAEEDALLCAYVRQYGPREWNLVSQRMSTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQETNKAIGPVDDTKYDHILETFAEKLVKEHPSQSSYLMAASSGAFLHIDAPVPASLPAPASSSALLPPWLSNSSTTNPSSAIRPPSSPSVTLSLSPSTAPPPWLQPERGPGNVTAPHGDHNMVVSELIECCKELEEGHRALAAHRKEAAWRLRRVELQLEAEKASRRREKMEEIEAKIKAIWEEQNAALDRIEAEYREQLAGLRRDAESKEQKLAEQWNVKHMRVVKCMKQVGCRIPRIAEPNGR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01206 358 Coils Coil 306 326 - -
Pumo7g01206 358 SUPERFAMILY Homeodomain-like 6 100 IPR009057 -
Pumo7g01206 358 ProSiteProfiles Myb-like domain profile. 1 55 IPR001005 -
Pumo7g01206 358 Pfam Myb-like DNA-binding domain 9 70 - -
Pumo7g01206 358 Coils Coil 265 287 - -
Pumo7g01206 358 CDD SANT 65 106 IPR001005 -
Pumo7g01206 358 MobiDBLite consensus disorder prediction 185 211 - -
Pumo7g01206 358 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 3 352 - -
Pumo7g01206 358 Gene3D - 6 60 - -
Pumo7g01206 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Pumo7g01206 358 SMART sant 5 57 IPR001005 -
Pumo7g01206 358 SMART sant 60 108 IPR001005 -
Pumo7g01206 358 FunFam MYB-related transcription factor 6 60 - -
Pumo7g01206 358 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Pumo7g01206 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Pumo7g01206 358 CDD SANT 8 55 IPR001005 -
Pumo7g01206 358 Gene3D - 64 124 - -
Pumo7g01206 358 MobiDBLite consensus disorder prediction 185 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01206 Pumo-Chr7 27123209 27126235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01206 3 351 MYB Transcription Factor Family AT2G37630 63.130 1.09e-153 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo7g01206 Myb_DNA-bind_6 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01206 K09422 - zju:107430642 487.263