Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01158 ATGGAAAGGAAAGGGAACCCTGCAGAAAGGAGCGCAAACGGGGAAAAGGAAGAACAGAGCAAACCAAAGGAAAAACCCGAGACCGTGCCGTTTTGCAAGCTGTTTGCGTTTGCGGACTCCACTGACATTCTGTTGATGGTTGTTGGAAGCATCGGTGGCATTGGAAACGGTTTAGGGTTTCCTCTCATGACGTTTCTGTTTGGTCAAATAATTGACACTTTCGGTAGTAACCAGGAAAGCCCCAACATAGTGGAAAAAGTGTCTGAAGTTTCTCTTAAATTTGTATACTTGGCAGTAGGATCTGGGGTCGCAGCGTTCCTCCAGGTGACTTGCTGGATGGTTACAGGGGAAAGACAGGCTGCACGAATAAGGGGATTATATTTGAAAACTATACTAAGACAAGACGTTGCTTTCTTTGACATGGAAACAAACACTGGAGAGGTGATAGGGAGAATATCAGGTGACACGGTTCTCATTCAAGATGCTATGGGAGAGAAGGTTGGGAAATTTGTGCAGCTGATAGCAACATTCTTAGGGGGCTTTGCAATAGCATTTTCCAAAGGGTGGCTTCTTACCCTTGTCATGTTGTGCATTCTTCCACTCCTTGTTTTGTCAGGGGCTGCTATGGCCATCATCCAAGGCAGGATGGCTTCCAGAGGTCAAGCTGCTTATGCAAAAGCTGCACATGTAGTTGAGCAGACAATTGGCTCAATAAGAACTGTTGCATCCTTTACTGGGGAAAAACAAGCAGTGTCTAATTACAGAAAATTTCTTGTAGAAGCTTACGTGACAGGCGTTCATGAAGGTTCCGTTGCTGGCGTGGCCCTTGGCACAGTTATGCTTCTTGTTTTCTGTGGTTATGCTTTGGCCGTGTGGTTTGGCGCAAAGATGATAATGGAAAAAGGATATAATGGGGGCACGGTGCTTAATGTGATTGCTGCTTTGTTAACTGCTTCAATGTCTCTTGGGGAGGCATCCCCTATCATGAGTGCTTTTGCCGCGGGTCAAGCTGCAGCTTACAAAATGTTTGAAACAATTGAGAGGAAGCCAGAGATAGATGCTTATGATCCAAATGGGAAAACATTAGAGGATATTGAAGGTGAAATAGAGTTGAGGGATGTTTGTTTCAGCTATCCAGCGAGGCCTGAGGAGTTGATATTCAATGAGTTCTCTCTTGAGATACCTAGTGGCACAAGTGCTGCATTAGTGGGACAAAGTGGAAGTGGAAAATCTACCGTTATCAGTTTGTTAGAGAGATTCTATGATCCACAAGCAGGTGAAGTTCTTATTGATGGCATTAACCTGAAAGAGTTTCAGCTTAGGTGGATCAGAGGAAAAATTGGCCTAGTTAATCAGGAGCCAGTGTTGTTTGCATCAAGCATTAAGGATAACATTGCATATGGAAAGGAGGGAGTGGCAATTGAAGAGATAAGATCAGCGTGTGAACTTGCAAATGCTACTAAATTCATTGATAAACTGCCACAGGGATTGAACACAATGGTTGGTGAGCATGGAACTCAACTCTCTGGTGGACAGAAGCAGCGCATTGCCATAGCAAGAGCAATCCTAAAAGATCCAAGAATTCTACTTCTGGACGAAGCTACAAGTGCCCTTGATGCAGAGTCTGAAAGGGTAGTGCAAGAGGCTCTAGATAGGGTCATGGTTAACCGAACTACTGTTGTTGTGGCACATCGCTTGAGCACAGTGAGGAATGCTGATATGATTGCTGTAATTCATAAGGGGAAGGTGGTTGAAAAAGGAACACACTCAGAATTACTCAAGGATTCTGAAGGAGCTTACTCCCAATTGATACATTTACAAGAAGTAAAAAAGGAATCAGAAGAAACTACAAGCCATCACAGCAAGAGTGAACTTTCTGCAGAATCCTCTAAACAGTTAACTAAAAAGAGGTCACTTCGGAGATCTATTAGTAGGGGATCATCTATGGGGAGTAGTAGCCGCCACTCATTTTCACTTTCCTATGTCCCTGATCCTGAAGACGAAGACACATTACACACAGAACAAGCACAAGAGGTTCCGCTCCACCGCCTTGCTTCTCTCAACAAGCCAGAGATTCCAGTTCTTCTGATTGGATGTATAGCTGCCATAGCAAATGGTGTTATACTTCCCATATTTGGGGTGTTGATTTCCAGCGCGGTCAAAACATTTTATGAACCATTTGATGAGATGAAAAAGGATTCCAAGTTTTGGGCACTAATGTTTGTTGTCCTTGGTCTTGCATCATTGTTGGTAATTCCAGCTCGAGCATACTTTTTTTCTGTGGCTGGATGCAAGTTAATCCAACGTATCAGGGTAATATGTTTTGAGAAAGTGGTCAACATGGAGGTTGGCTGGTTTGATGAGCCTACCAACTCAAGTGGTGCCATCAGTGCAAGGCTCTCAGCAATTGCTGCTTCTGTGCGTGCCCTTGTTGGTGATGCACTGGGACTATTGGTCCAAAATTTAGCATGTGCCATGGCAGGTTTGATTATTGCTTTCATTGCATGCTGGCAGCTAGCATTGATTATTCTTGTCTTGATTCCCCTGATTGGAGCAAATGGCTATGTTCAAACGAAATTCATGAAGGGGTTCAGCAAAGATGCAAAGATGATGTACGAGGAAGCAAGCCAGGTTGCTAAGGATGCAGTTGGAAATATAAGAACAGTAGCTTCTTTCTGTGCTGAAGATAAGGTCATGGAATTGTATAGGAAGAAATGTGAAGACCCCATGAAAACAGGGATATGGCAAGGGTTGATCAGTGGATTAGGATTTGGGGTTTCATTTTTCGTACTATTTAGTGTCTATGCAACTAGTTTCTATGCAGGAGCTAGACTTGTGGACGCTGGAGAAGCATCATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACAATGGCAGCTATTGGAGTTTCCCAATTTAGCACAATTTCTCCTGATTCTGGCAAAGCCAAGTCAGCTACTGCTTCCATATTTGGAATAATTGATAAGAAGTCAAAGATAGATCCAAGTGATGAGTCTGGTACCACATTGGATAGCGTTAAGGGAGAAATTGAGCTTCGTCGTGTGAGGTTCAACTACCCATCAAGGCCAAAGATACAGATTTTCCGAGACCTTAGCTTGGCTATCCATTCTGGCAAGACAGTGGCCCTTGTTGGTGAAAGTGGAAGTGGCAAATCCACGGTGATTGCGTTGTTGCAGAGATTTTATGATCCTGATTCAGGTGAAATCACACTTGATGGTATACCAATTCGGGAGTTACAACTCAAGTGGTTTAGGAATGAAATGGGTCTTGTAAGCCAGGAGCCAGTATTGTTCAATGACACTATTCGTGACAACATTGCTTATGGAAAGGGAGGTGATGCAACTGAAGCAGAAATCATAGCTGCAGCAGAACTAGCTAATGCCCATGTGTTCATCAGTGGCTTACAACAGGGTTATGATACTGTAGTGGGAGAAAGGGGAACCCAATTATCTGGTGGGCAGAAGCAACGGGTAGCCATTGCACGTGCTATAATTAAAAGTCCAAAGATATTGCTACTAGATGAAGCCACAAGTGCATTAGATGCTGAGTCAGAGAGAGTTGTTCAGGATGCATTGGAAAAAGTCATGGTGAATAGGACTACTGTGGTTGTGGCACATCGCCTATCTGCAATAAAAAATGCAGATTTGATTGCTGTTGTGAAAGATGGAGTTATAGTGGAGAAGGGAAGGCATGAAACACTCGTTAATGTCACGGATGGATTTTATGCTTCCATAGTCCAACTTCACTCAAATGCTTCAAAAATAGGAGTTTCGTAA 3798 0.4336 MERKGNPAERSANGEKEEQSKPKEKPETVPFCKLFAFADSTDILLMVVGSIGGIGNGLGFPLMTFLFGQIIDTFGSNQESPNIVEKVSEVSLKFVYLAVGSGVAAFLQVTCWMVTGERQAARIRGLYLKTILRQDVAFFDMETNTGEVIGRISGDTVLIQDAMGEKVGKFVQLIATFLGGFAIAFSKGWLLTLVMLCILPLLVLSGAAMAIIQGRMASRGQAAYAKAAHVVEQTIGSIRTVASFTGEKQAVSNYRKFLVEAYVTGVHEGSVAGVALGTVMLLVFCGYALAVWFGAKMIMEKGYNGGTVLNVIAALLTASMSLGEASPIMSAFAAGQAAAYKMFETIERKPEIDAYDPNGKTLEDIEGEIELRDVCFSYPARPEELIFNEFSLEIPSGTSAALVGQSGSGKSTVISLLERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVNQEPVLFASSIKDNIAYGKEGVAIEEIRSACELANATKFIDKLPQGLNTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHKGKVVEKGTHSELLKDSEGAYSQLIHLQEVKKESEETTSHHSKSELSAESSKQLTKKRSLRRSISRGSSMGSSSRHSFSLSYVPDPEDEDTLHTEQAQEVPLHRLASLNKPEIPVLLIGCIAAIANGVILPIFGVLISSAVKTFYEPFDEMKKDSKFWALMFVVLGLASLLVIPARAYFFSVAGCKLIQRIRVICFEKVVNMEVGWFDEPTNSSGAISARLSAIAASVRALVGDALGLLVQNLACAMAGLIIAFIACWQLALIILVLIPLIGANGYVQTKFMKGFSKDAKMMYEEASQVAKDAVGNIRTVASFCAEDKVMELYRKKCEDPMKTGIWQGLISGLGFGVSFFVLFSVYATSFYAGARLVDAGEASFSDVFRVFFALTMAAIGVSQFSTISPDSGKAKSATASIFGIIDKKSKIDPSDESGTTLDSVKGEIELRRVRFNYPSRPKIQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIPIRELQLKWFRNEMGLVSQEPVLFNDTIRDNIAYGKGGDATEAEIIAAAELANAHVFISGLQQGYDTVVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALEKVMVNRTTVVVAHRLSAIKNADLIAVVKDGVIVEKGRHETLVNVTDGFYASIVQLHSNASKIGVS 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01158 1265 Gene3D ABC transporter type 1, transmembrane domain 984 1261 IPR036640 GO:0005524|GO:0016020
Pumo7g01158 1265 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524|GO:0016887
Pumo7g01158 1265 MobiDBLite consensus disorder prediction 610 674 - -
Pumo7g01158 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1007 1254 IPR027417 -
Pumo7g01158 1265 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Pumo7g01158 1265 FunFam ABC transporter B family member 9 33 366 - -
Pumo7g01158 1265 MobiDBLite consensus disorder prediction 610 635 - -
Pumo7g01158 1265 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Pumo7g01158 1265 Gene3D ABC transporter type 1, transmembrane domain 33 625 IPR036640 GO:0005524|GO:0016020
Pumo7g01158 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1254 IPR003439 GO:0005524
Pumo7g01158 1265 FunFam ABC transporter B family member 1 359 608 - -
Pumo7g01158 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo7g01158 1265 Gene3D - 359 608 IPR027417 -
Pumo7g01158 1265 Gene3D - 1007 1257 IPR027417 -
Pumo7g01158 1265 CDD ABC_MTABC3_MDL1_MDL2 1017 1255 - -
Pumo7g01158 1265 PANTHER ABC TRANSPORTER B FAMILY 8 610 IPR039421 -
Pumo7g01158 1265 Pfam ABC transporter transmembrane region 695 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo7g01158 1265 Pfam ABC transporter transmembrane region 52 320 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo7g01158 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 607 IPR027417 -
Pumo7g01158 1265 MobiDBLite consensus disorder prediction 643 659 - -
Pumo7g01158 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Pumo7g01158 1265 Gene3D ABC transporter type 1, transmembrane domain 675 983 IPR036640 GO:0005524|GO:0016020
Pumo7g01158 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 696 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo7g01158 1265 FunFam ABC transporter B family member 1 675 983 - -
Pumo7g01158 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 330 - -
Pumo7g01158 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 685 1000 - -
Pumo7g01158 1265 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Pumo7g01158 1265 SUPERFAMILY ABC transporter transmembrane region 682 1001 IPR036640 GO:0005524|GO:0016020
Pumo7g01158 1265 Pfam ABC transporter 1036 1185 IPR003439 GO:0005524
Pumo7g01158 1265 SMART AAA_5 1044 1237 IPR003593 GO:0016887
Pumo7g01158 1265 SMART AAA_5 396 582 IPR003593 GO:0016887
Pumo7g01158 1265 SUPERFAMILY ABC transporter transmembrane region 33 353 IPR036640 GO:0005524|GO:0016020
Pumo7g01158 1265 MobiDBLite consensus disorder prediction 1 25 - -
Pumo7g01158 1265 FunFam ABC transporter B family member 9 984 1006 - -
Pumo7g01158 1265 FunFam ABC transporter B family member 1 1007 1257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01158 Pumo-Chr7 25920533 25930516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01158 29 1256 Calmodulin-binding Proteins AT2G36910 44.570 0.0 1037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01158 K05658 - gmx:100800034 1976.06