Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01148 ATGATTGCTGCTGTTGCATTGCCAAGCATGGCCATCGTGTCAATGATAAAAGACTCCACGGGAATTGGTGTACAGAATGTGAACACTTTGTTGATCATTGGTGGACCAGATTATAGGAGCATGCATGAAGAACAACCAGAGGCCAATGGAGTGGCCTTTTTGTTTAGTGTGGACTGTAGGTCTCGTTTGGAGCTTCCAATTCCATCCTCATATTTTGGAAATTGCATTATTGGTCATAAGGTTATGGATGAGACAAAGAACTTGTTGGGAGATTATGGCTTTATCAATGCTCTTGAATGGATAAATGAAACTTTGAAAAGGTTGGAGGATGGAGTGCTGAGTGGGGGCATGCAACATGTTCGCAATTACTATAACTCAGAAGCTCAAATGATAAGAGGTAGCTTTCATCAGCCATTCATCTCTAGGACATACAAAACCAGTTTCTTGAAGCCAAGATCAAAGGCAGAGATCAAATTATTGGGCGCTAAGAAACATAGTGAAGCAGAGAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAAATATCCTCCCCAACTTAATCAAAAAGGACAAGGCATCAGTATTGGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAGGTGTCAAAACTGGAAGAACATAGTTCTAAAAACCCATCAAAGGATGTTGTTAAGTTTCTTAATGGGGGCAGACAAGTTGAATTTGGAAAGATGTAA 732 0.4044 MIAAVALPSMAIVSMIKDSTGIGVQNVNTLLIIGGPDYRSMHEEQPEANGVAFLFSVDCRSRLELPIPSSYFGNCIIGHKVMDETKNLLGDYGFINALEWINETLKRLEDGVLSGGMQHVRNYYNSEAQMIRGSFHQPFISRTYKTSFLKPRSKAEIKLLGAKKHSEAEKRRRMRINGQYETLRNILPNLIKKDKASVLAETIKQVKELKKKVSKLEEHSSKNPSKDVVKFLNGGRQVEFGKM 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01148 243 Gene3D - 161 221 IPR036638 GO:0046983
Pumo7g01148 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Pumo7g01148 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 220 IPR036638 GO:0046983
Pumo7g01148 243 Gene3D - 37 147 IPR023213 -
Pumo7g01148 243 Pfam Helix-loop-helix DNA-binding domain 164 209 IPR011598 GO:0046983
Pumo7g01148 243 SMART finulus 166 215 IPR011598 GO:0046983
Pumo7g01148 243 Coils Coil 199 219 - -
Pumo7g01148 243 Pfam Transferase family 45 123 - -
Pumo7g01148 243 PANTHER TRANSCRIPTION FACTOR BHLH30 124 222 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01148 Pumo-Chr7 25040837 25043332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01148 159 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 58.333 1.67e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g01148 Transferase 8.8e-06 CL0149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01148 - - gmx:102667782 198.749