Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01146 ATGGAAGATTCTGATCAACCAGCCAAATCTGCTGAAAACCAGCAAACCGAACAAGTGTGTAGTTTTTTCAGAAAGCCGAAGAAGACCTTAAAGCCTGACAATAAGTTGTACTTTTCCACTGGCTCTTCAAAAAGCTCTGCATCTGCTGAACCAAGTGAAGAATCAGGAAAACCAGTCTTTCAGTTCGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTCTAGAGACTGAGACTGAGTTTTCAAAAGATGCTCGTGCCGTCCGTGAAAGAGCTCTTAAGCAAGCAGAGGAGAGTCTGAAAGGGAAAACTGCAAGCTCTGAGAATGAAAAATTATATATGGGAATTAACAGTTACAAAGACTACAAGGCTGGCTTTTGTAGAGAGCAAACAATTGCTGGTGAAAAAGCTGGTGGGTCACATGGACCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGAAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGAGAGGATGCGGATGAGGAGGAGGGTGCTAATTTGACTGATGAAGATGATGATGATGATTCGTTACCATTTGCCTGTTTCATTTGTAGAAACCCTTTTGTGGATCCTGTAGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAAGTATATAGACTTACAATTGTTGCAAATAAGTTTTAA 837 0.4122 MEDSDQPAKSAENQQTEQVCSFFRKPKKTLKPDNKLYFSTGSSKSSASAEPSEESGKPVFQFESSKEIQVQHDSKATATLETETEFSKDARAVRERALKQAEESLKGKTASSENEKLYMGINSYKDYKAGFCREQTIAGEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWKEAEKARKMRLAAGEDADEEEGANLTDEDDDDDSLPFACFICRNPFVDPVVTKCKHYFCEHCALKVYRLTIVANKF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01146 278 Gene3D - 160 192 - -
Pumo7g01146 278 MobiDBLite consensus disorder prediction 35 77 - -
Pumo7g01146 278 SUPERFAMILY RING/U-box 240 270 - -
Pumo7g01146 278 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Pumo7g01146 278 Pfam Zinc finger, C3HC4 type (RING finger) 241 270 IPR018957 GO:0046872
Pumo7g01146 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 272 IPR013083 -
Pumo7g01146 278 MobiDBLite consensus disorder prediction 1 88 - -
Pumo7g01146 278 PANTHER ZINC FINGER PROTEIN 183 12 270 IPR039971 -
Pumo7g01146 278 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 163 188 IPR000571 GO:0046872
Pumo7g01146 278 CDD RING-HC_RNF113A_B 237 270 - -
Pumo7g01146 278 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Pumo7g01146 278 FunFam Zinc finger CCCH domain-containing protein 1 160 194 - -
Pumo7g01146 278 SUPERFAMILY CCCH zinc finger 161 193 IPR036855 GO:0046872
Pumo7g01146 278 MobiDBLite consensus disorder prediction 8 22 - -
Pumo7g01146 278 MobiDBLite consensus disorder prediction 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01146 Pumo-Chr7 24947593 24970212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01146 7 267 C2H2 Transcription Factor Family AT1G01350 62.199 6.16e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo7g01146 zf-C3HC4 6.4e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01146 K13127 - gmx:100787434 465.692