Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01145 ATGGAGAACGACACATACAAAGATGATAACGAACAGCAAGAAACCTTCGAACCCTTTGATTGCTGTGTTTGCCTGGATCTATTATACAAGCCTATTGTGCTATCTTGTGGTCACATATCCTGTTTCTGGTGTGTCCACAAATCAATGAGTGGCTTGCATGAGTCTCATTGCCCGATTTGTAGGCATCCGTACTATCACTTCCCAACGATCTGTCAAATGCTTCACTTTTTGCTTCTTAAGATCTATCCAGATGCTTACAAGAGGAGGCAAAATCAGACACTTGAGGAAGAAGAGAAAATGAGCAACTTCTCCCCTCAGTTTGATGCTTATACATGTGGATCACAAGTTGTATTTGACCACCTTGGGAGATCACCTTGCCGCACCATTAAAATTCCAGTGTCCAACTCATGCAGCCTAGAATCATTTGAGTGTATGGGGCAATCAGGGTCTGCAACTCTTAAAAGAAATGAAGGCACCACCATCTATTCTGAGCACACTTCCACCAGAACATCTGAAGTTACTGGGACTCCTGATGAAGGAAAAAAGTTACCTCAGAATGAGCACAATCGACAACAGAAAATATTAATTGGAGACGTTACATGTACAATGTGCAAGCAGCTTCTATTTCATCCTATTGTTCTTAATTGTGGTCATGTTTACTGTAAGACTTGTATAATCAACATAGCTGAAGTGATGCTTAAATGTCAAGTTTGTCAAAGTCCACATCCAAGAGGATTACCAAAAGTTTGTTTGACACTTGATCACTTTTTGGAGGAGCAATTTCCAGAAGAATATGCAAAGCGAAGGAATGCAATTCAACTTAACCAAGTCAAAGTCAAACTTGAGGCTGAGACCACATCTTGTTCATTGCATAATGGTGAAGGAGAAAAGATAGCATGGTGGTCTGATCCCAGAGTTCACACTGCAGTTGGTTGTGATTTTTGTGGGATGCTGCCAATAATTGGGGATAGATATAAATGCCTTGACTGTAAGGAAAAGATTGGTTTTGATCTATGTGGTGATTGCTATAAGAAGACCGGCTCAAAGCTTCCTGGCCGATTTAACCAGCAGCATACCCCTGAACATAGGTTCGAGATTATACAACACAATCAGATACCCTGGAGACAACTGAATGAGCAAGAGTCACTGGAAAATTTTGATCCTGCTTTGACTGATGATGAAGATGACCAGAATAACTCTGAAACCACCAATTGA 1215 0.4082 MENDTYKDDNEQQETFEPFDCCVCLDLLYKPIVLSCGHISCFWCVHKSMSGLHESHCPICRHPYYHFPTICQMLHFLLLKIYPDAYKRRQNQTLEEEEKMSNFSPQFDAYTCGSQVVFDHLGRSPCRTIKIPVSNSCSLESFECMGQSGSATLKRNEGTTIYSEHTSTRTSEVTGTPDEGKKLPQNEHNRQQKILIGDVTCTMCKQLLFHPIVLNCGHVYCKTCIINIAEVMLKCQVCQSPHPRGLPKVCLTLDHFLEEQFPEEYAKRRNAIQLNQVKVKLEAETTSCSLHNGEGEKIAWWSDPRVHTAVGCDFCGMLPIIGDRYKCLDCKEKIGFDLCGDCYKKTGSKLPGRFNQQHTPEHRFEIIQHNQIPWRQLNEQESLENFDPALTDDEDDQNNSETTN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01145 404 Pfam RING-type zinc-finger 201 225 IPR027370 -
Pumo7g01145 404 SUPERFAMILY RING/U-box 13 71 - -
Pumo7g01145 404 MobiDBLite consensus disorder prediction 164 184 - -
Pumo7g01145 404 FunFam E3 ubiquitin-protein ligase PRT1 188 283 - -
Pumo7g01145 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 107 IPR013083 -
Pumo7g01145 404 ProSitePatterns Zinc finger RING-type signature. 216 225 IPR017907 -
Pumo7g01145 404 ProSiteProfiles Zinc finger RING-type profile. 21 61 IPR001841 -
Pumo7g01145 404 Gene3D - 302 368 IPR043145 -
Pumo7g01145 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 268 IPR013083 -
Pumo7g01145 404 Pfam Zinc finger, C3HC4 type (RING finger) 20 64 - -
Pumo7g01145 404 SMART zz_5 306 355 IPR000433 GO:0008270
Pumo7g01145 404 SUPERFAMILY RING/U-box 305 367 - -
Pumo7g01145 404 SMART ring_2 21 60 IPR001841 -
Pumo7g01145 404 SMART ring_2 201 238 IPR001841 -
Pumo7g01145 404 PANTHER UNCHARACTERIZED 12 370 - -
Pumo7g01145 404 ProSiteProfiles Zinc finger RING-type profile. 201 239 IPR001841 -
Pumo7g01145 404 SUPERFAMILY RING/U-box 195 242 - -
Pumo7g01145 404 ProSiteProfiles Zinc finger ZZ-type profile. 307 372 IPR000433 GO:0008270
Pumo7g01145 404 FunFam E3 ubiquitin-protein ligase PRT1 11 107 - -
Pumo7g01145 404 Pfam Zinc finger, ZZ type 307 345 IPR000433 GO:0008270
Pumo7g01145 404 FunFam E3 ubiquitin-protein ligase PRT1 302 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01145 Pumo-Chr7 24902918 24914071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01145 19 61 C3H Transcription Factor Family AT2G42030 39.535 1.08e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01145 - - gmx:100787174 514.998