Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01135 ATGGAGATGGACAGCATTGACTGTGTGTCATTCTCTTATGGCATGGATGAGGATGAGATCCAACACCACACTCTGCATTCTCATTGCCACTCTGAGTTTTCTTCTAACAAGCCTTGCAATGGTGGTGCTAATAACAATAATGTCATGGGAGCCATGGCCATTGCTCCTGCAACTAGCATTCATGAGTTGCTAGACTGCCCTGTTTGCACCAATTCAATGCACCCCCCAATTCATCAGTGCCACAATGGGCACACATTGTGTTCAACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGGCAGGAGCTTGGAGATATTAGGTGCCTGGCACTGGAGAAGGTGGTTGAATCAGTTAAGTTACCTTGCAAGTACTACTCTCTTGGATGTCCTGAAATCTTTCCATACTACAACAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATATAGTTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACATTCCTTTCCTTGTTGCACATTTGAGTGATGTTCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGATATGTGAAGTCCAACCCTCCTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGCTTTGGCCAATACTTCTGTCTTCACTTCAAAGCTTTCCAGCTTGGCATGGCTCCAGTTTACATGGCCTTCCTTCAATTTATGGGTGACGAGAATGAGGCTCGGAACTACAGTTATAGCCTTGAGGTTGGGGCAAATGGCAGGAAACTCATTTGGGAGAGTACACCACGAAGTATTTGTGACAGCCACCATAAAGTCAGGGATAGCCACAATGGTCTCATTATTCAACGGAACATGGCCTTACTTTTGTCTGGTGGGGAACTAAGAGTTACGGGAAAGAACATCGAAGGAACAAAATAA 933 0.4459 MEMDSIDCVSFSYGMDEDEIQHHTLHSHCHSEFSSNKPCNGGANNNNVMGAMAIAPATSIHELLDCPVCTNSMHPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVVESVKLPCKYYSLGCPEIFPYYNKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLSDVHKVDMHTGCTFNHRYVKSNPPEVENATWMLTVFHCFGQYFCLHFKAFQLGMAPVYMAFLQFMGDENEARNYSYSLEVGANGRKLIWESTPRSICDSHHKVRDSHNGLIIQRNMALLLSGGELRVTGKNIEGTK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01135 310 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270
Pumo7g01135 310 SUPERFAMILY TRAF domain-like 119 298 - -
Pumo7g01135 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 174 IPR013083 -
Pumo7g01135 310 CDD RING-HC_SIAHs 64 102 - -
Pumo7g01135 310 FunFam E3 ubiquitin-protein ligase SINAT3 118 174 - -
Pumo7g01135 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 303 IPR008974 GO:0005515
Pumo7g01135 310 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Pumo7g01135 310 FunFam E3 ubiquitin-protein ligase SINAT5-like 175 304 - -
Pumo7g01135 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 47 297 - -
Pumo7g01135 310 SUPERFAMILY RING/U-box 51 108 - -
Pumo7g01135 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 121 IPR013083 -
Pumo7g01135 310 Pfam Seven in absentia protein family 108 299 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pumo7g01135 310 FunFam E3 ubiquitin-protein ligase SINAT3 12 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01135 Pumo-Chr7 23702747 23703679 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01135 57 304 C3H Transcription Factor Family AT2G41980 73.913 1.32e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01135 K04506 - tcc:18605771 540.421