Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01131 ATGGATGAGGATGAGATCCAACACCACACTCTGCATTCTCATCACCACTCTGAGTTTTCTTCTAACAAGCCTTGCAATGGTGGTGCTAATAACAATAATGTCATGGGAGCCACGGCCATTGCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGCACCCCCCAATTCATCAGTGCCACAATGGGCACACATTGTGTCCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGGCAGGAGCTTGGAGATATTAGGTGCCTGGCACTGGAGAAGGTGGTTGAATCACTTAAGTTACCTTGCAAGTACTACTCTCTTGGATGTCCTGAAATCTTTCCATACTACAACAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATATAGTTGTCCTTATGCTGGATCAGAGTGCTCAGTTGTTGGGGACATTCCTTTCCTTGTTGCACATTTGAGAGATAATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGATATGTGAAGTCCAATCCTCCTGAAGCAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGCTTTGGCCAATACTTCTGCCTTCACTTCGAAGCTTTCCAGCTTGGCATGGCTCCTGTTTACATGGCCTTCCTTCAATTTATGGAAAGAATACTATGTGGTTAA 696 0.4454 MDEDEIQHHTLHSHHHSEFSSNKPCNGGANNNNVMGATAIAPATSVHELLECPVCTNSMHPPIHQCHNGHTLCPTCKTRVHNRCPTCRQELGDIRCLALEKVVESLKLPCKYYSLGCPEIFPYYNKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDNHKVDMHTGCTFNHRYVKSNPPEAENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLQFMERILCG 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01131 231 MobiDBLite consensus disorder prediction 1 22 - -
Pumo7g01131 231 FunFam E3 ubiquitin-protein ligase SINAT3 1 103 - -
Pumo7g01131 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 158 IPR013083 -
Pumo7g01131 231 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 32 220 - -
Pumo7g01131 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 104 IPR013083 -
Pumo7g01131 231 MobiDBLite consensus disorder prediction 1 19 - -
Pumo7g01131 231 ProSiteProfiles Zinc finger RING-type profile. 52 88 IPR001841 -
Pumo7g01131 231 SUPERFAMILY RING/U-box 39 94 - -
Pumo7g01131 231 FunFam E3 ubiquitin-protein ligase SINAT3 104 160 - -
Pumo7g01131 231 CDD RING-HC_SIAHs 50 88 - -
Pumo7g01131 231 ProSiteProfiles Zinc finger SIAH-type profile. 105 165 IPR013010 GO:0008270
Pumo7g01131 231 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 159 227 IPR008974 GO:0005515
Pumo7g01131 231 Pfam Seven in absentia protein family 94 226 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pumo7g01131 231 SUPERFAMILY TRAF domain-like 105 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01131 Pumo-Chr7 23579216 23580680 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01131 43 225 C3H Transcription Factor Family AT2G41980 78.689 5.90e-109 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01131 K04506 - gmx:100810573 431.795