Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01130 ATGGATGAGGATGAGATCCAACACCACACTCTGCATTCTCATCACCACTCTGAGTTTTCTTCTAACAAGCCTTGCAATGGTGGTGCTAATAACAATAATGTCATGGGAGCCACGGCCATTGCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGCACCCCCCAATTCATCAGTGCCACAATGGGCACACATTGTGTCCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGGCAGGAGCTTGGAGATATTAGGTGCCTGGCACTGGAGAAGGTGGTTGAATCACTTAAGTTACCTTGCAAGTACTACTCTCTTGGATGTCCTGAAATCTTTCCATACTACAACAAGCTTAAGCATGAGACAAGACCTCCTTTTACTGCCTTTGAACGATGA 423 0.461 MDEDEIQHHTLHSHHHSEFSSNKPCNGGANNNNVMGATAIAPATSVHELLECPVCTNSMHPPIHQCHNGHTLCPTCKTRVHNRCPTCRQELGDIRCLALEKVVESLKLPCKYYSLGCPEIFPYYNKLKHETRPPFTAFER 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01130 140 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 31 135 - -
Pumo7g01130 140 Pfam Seven in absentia protein family 94 137 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pumo7g01130 140 CDD RING-HC_SIAHs 50 88 - -
Pumo7g01130 140 MobiDBLite consensus disorder prediction 1 22 - -
Pumo7g01130 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 107 IPR013083 -
Pumo7g01130 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 139 IPR013083 -
Pumo7g01130 140 SUPERFAMILY TRAF domain-like 105 136 - -
Pumo7g01130 140 MobiDBLite consensus disorder prediction 1 19 - -
Pumo7g01130 140 ProSiteProfiles Zinc finger RING-type profile. 52 88 IPR001841 -
Pumo7g01130 140 FunFam E3 ubiquitin-protein ligase SINAT3 1 104 - -
Pumo7g01130 140 SUPERFAMILY RING/U-box 45 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01130 Pumo-Chr7 23454484 23467282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01130 43 138 C3H Transcription Factor Family AT2G41980 68.750 1.39e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01130 K04506 - gmx:100810573 233.417