Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01129 ATGGATGAGGATGAGATCCAACACCACACTCTGCATTCTCATCACCACTCTGAGTTTTCTTCTAACAAGCCTTGCAATGGTGGTGCTAATAACAATAATGTCATGGGAGCCACGGCCATTGCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGCACCCCCCAATTCATCAGTGCCACAATGGGCACACATTGTGTCCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGGCAGGAGCTTGGAGATATTAGGTGCCTGGCACTGGAGAAGGTGGTTGAATCACTTAAGTTACCTTGCAAGTACTACTCTCTTGGATGTCCTGAAATCTTTCCATACTACAACAAGCTTAAGCATGAGACAGTTACTATTTGTTTCACTGAATTGCATTATGGTAGTGGAGTTACCTTTGCCCTATTTGTATAA 456 0.4452 MDEDEIQHHTLHSHHHSEFSSNKPCNGGANNNNVMGATAIAPATSVHELLECPVCTNSMHPPIHQCHNGHTLCPTCKTRVHNRCPTCRQELGDIRCLALEKVVESLKLPCKYYSLGCPEIFPYYNKLKHETVTICFTELHYGSGVTFALFV 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01129 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 139 IPR013083 -
Pumo7g01129 151 Pfam Seven in absentia protein family 94 131 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pumo7g01129 151 CDD RING-HC_SIAHs 50 88 - -
Pumo7g01129 151 MobiDBLite consensus disorder prediction 1 22 - -
Pumo7g01129 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 107 IPR013083 -
Pumo7g01129 151 SUPERFAMILY RING/U-box 45 110 - -
Pumo7g01129 151 SUPERFAMILY TRAF domain-like 105 132 - -
Pumo7g01129 151 FunFam E3 ubiquitin-protein ligase SINAT3 1 104 - -
Pumo7g01129 151 MobiDBLite consensus disorder prediction 1 19 - -
Pumo7g01129 151 ProSiteProfiles Zinc finger RING-type profile. 52 88 IPR001841 -
Pumo7g01129 151 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 31 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01129 Pumo-Chr7 23425563 23439459 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01129 43 130 C3H Transcription Factor Family AT2G41980 73.864 3.66e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01129 K04506 - gmx:100810573 234.958