Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01127 ATGGATGAGGATGAGATCCAACACCACACTCTGCATTCTCATCACCACTCTGAGTTTTCTTCTAACAAGCCTTGCAATGGTGGTGCTAATAACAATAATGTCATGGGAGCCACGGCCATTGCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGCACCCCCCAATTCATCAGTGCCACAATGGGCACACATTGTGTCCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGGCAGGAGCTTGGAGATATTAGGTGCCTGGCACTGGAGAAGGTGGTTGAATCACTTAAGTTACCTTGCAAGTACTACTCTCTTGGATGTCCTGAAATCTTTCCATACTACAACAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATATAGTTGTCCTTATGCTGGATCAGAGTGCTCAGTTGTTGGGACATTCCTTTCCTTGTTGCACATTTGA 480 0.4521 MDEDEIQHHTLHSHHHSEFSSNKPCNGGANNNNVMGATAIAPATSVHELLECPVCTNSMHPPIHQCHNGHTLCPTCKTRVHNRCPTCRQELGDIRCLALEKVVESLKLPCKYYSLGCPEIFPYYNKLKHETVCNFRPYSCPYAGSECSVVGTFLSLLHI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01127 159 MobiDBLite consensus disorder prediction 1 22 - -
Pumo7g01127 159 Pfam Seven in absentia protein family 94 156 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pumo7g01127 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 158 IPR013083 -
Pumo7g01127 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 107 IPR013083 -
Pumo7g01127 159 MobiDBLite consensus disorder prediction 1 19 - -
Pumo7g01127 159 ProSiteProfiles Zinc finger RING-type profile. 52 88 IPR001841 -
Pumo7g01127 159 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 31 157 - -
Pumo7g01127 159 CDD RING-HC_SIAHs 50 88 - -
Pumo7g01127 159 FunFam E3 ubiquitin-protein ligase SINAT3 104 159 - -
Pumo7g01127 159 ProSiteProfiles Zinc finger SIAH-type profile. 105 159 IPR013010 GO:0008270
Pumo7g01127 159 FunFam E3 ubiquitin-protein ligase SINAT3 1 103 - -
Pumo7g01127 159 SUPERFAMILY TRAF domain-like 105 153 - -
Pumo7g01127 159 SUPERFAMILY RING/U-box 44 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01127 Pumo-Chr7 23396743 23397222 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01127 43 157 C3H Transcription Factor Family AT2G41980 71.304 6.69e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01127 K04506 - gmx:100810573 278.485