Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01106 ATGGTGTCAGGTTCGGGGATCTGCGCGAAGCGCGTGGTGGTGGACGCGCGGCACCACATGCTGGGTCGGCTGGCGTCGATCGTGGCGAAGGAGCTGCTGAACGGGCAGAAGGTGGTGGTGGTGCGGTGCGAAGAGATTTGCATCTCCGGTGGCCTCGTCAGGCAGAAGATGAAGTACATGAGGTTCCTCCGCAAACGCATGAACACCAAGCCCTCCCACGGCCCCATCCACTTCCGCGCACCCTCCAAGATCTTCTGGCGCACCGTTCGCGGAATGATTCCGCACAAGACCAAGCGTGGGGAAGCCGCTCTCGCTCGTTTGAAGGTTTATGAGGGAATTCCTCCTCCATATGACAAGACAAAGAGAATGGTTGTTCCAGATGCTCTGAAGGTGTTGAGACTTCAGAAAGGACACAAGTACTGCATACTGGGCAGGTTGTCATCTGAAGTTGGATGGAGCTACTATGATACCATCAGGGAGCTGGAAAAGAAGAGAAAGGAAAAGGCACATTTGGTTTATGAGAGAAAGAAGCAGCTCAACAAATTAAGGGTGAAAGCCGAGAAGGTTGCTGAAGACAAGCTCGGTTCCAACTTGATATCCTTGCTCCAGTCAAGTACTGAATAG 624 0.5321 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCILGRLSSEVGWSYYDTIRELEKKRKEKAHLVYERKKQLNKLRVKAEKVAEDKLGSNLISLLQSSTE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01106 207 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo7g01106 207 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pumo7g01106 207 PANTHER RIBOSOMAL PROTEIN L13 1 188 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo7g01106 207 FunFam 60S ribosomal protein L13a-4 8 154 - -
Pumo7g01106 207 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo7g01106 207 Gene3D - 156 202 - -
Pumo7g01106 207 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pumo7g01106 207 FunFam 60S ribosomal protein L13a 155 204 - -
Pumo7g01106 207 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Pumo7g01106 207 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Pumo7g01106 207 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01106 Pumo-Chr7 21878173 21881284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01106 1 198 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 89.899 8.42e-135 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01106 K02872 - gmx:100813340 390.578