Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01102 ATGCAAAATTGTCGATTTGGATCAGGATCCGTTGACACTAGATACCCTGGATCAAGATTCAGGTTCCGATCCCAAGACCCCAACGCGCCTCTACAACCCCTACAAGGACCTCAAAGTCCCTATTCGCAACCTCTACCAGCTCCCAACCTCCCCCAAGTACCTCCTCGTCGAGGAGGCTCGCCTCAAGCGCTGATCCTGGGGCGAGAACCTCACCTTCTCGGTCTCGTCGACGGCGTCAAATCCTTCGAGTCCGGTGACACTTCCAAGCTCCGTGTCAATCGCGTCCTCAACTCCTCTGGTCACGCCAGCCACCTCAAGAGCGGGATCATGGCGGCGAGGGACACCAACGACGTCTGGAACAACATTGCGGCGGGACTCGGCACCGGCGCGCTGTATCGCACCGGGAGAGGGGTGCGATTGGCTGCGGTGGCGGGCGCCGTCAAAGTGAGCAAATTGATAGGATCACCCCCAGGTTATGTTGGTTATCGAGAGGGTGGAGTTTTAACAGAAGCTATTAGAAGAAAACCATTCACATTGTTATTGCTTGATGAAATAGAGAAAGCTCATCCAGATATATTCAACATTCTTCTTTAA 594 0.537 MQNCRFGSGSVDTRYPGSRFRFRSQDPNAPLQPLQGPQSPYSQPLPAPNLPQVPPRRGGSPQALILGREPHLLGLVDGVKSFESGDTSKLRVNRVLNSSGHASHLKSGIMAARDTNDVWNNIAAGLGTGALYRTGRGVRLAAVAGAVKVSKLIGSPPGYVGYREGGVLTEAIRRKPFTLLLLDEIEKAHPDIFNILL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01102 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 197 IPR027417 -
Pumo7g01102 197 Gene3D - 131 197 IPR027417 -
Pumo7g01102 197 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 181 197 IPR001270 GO:0005524
Pumo7g01102 197 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 152 170 IPR001270 GO:0005524
Pumo7g01102 197 MobiDBLite consensus disorder prediction 1 60 - -
Pumo7g01102 197 MobiDBLite consensus disorder prediction 33 55 - -
Pumo7g01102 197 PANTHER ATP-DEPENDENT CLP PROTEASE 148 197 - -
Pumo7g01102 197 Pfam AAA domain (Cdc48 subfamily) 149 197 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01102 Pumo-Chr7 21687461 21691161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01102 73 139 Chloroplast and Mitochondria Gene Families AT1G72750 50.000 2.20e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01102 - K03696 gmx:100813158 109.383