Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01095 ATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCACCAGCTTGTTCAAGACTGTCACCGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGTCAACATGCGTGGACTGCTTCTCCCTAGTGCCAATCAGCTCCACCTTGGCCACACCTTCTTCACTCCTCAAAATCTTCTGGAGGAGATTCGTAATGCACCTTCAACAAACATGATGATGAATCAGCTGCCGAACCCTAACGATTTGGCCATGAGCACCATGCGAGGAGGGCCTGAAGAAACCCCTAAGCCTCCATCAGCTAATAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGACGTGCTTATGAAAGATGGTTTTTTCGCTCCAGCTAATGTAGGCGTCTCTCCCTACTAG 648 0.4923 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHTFFTPQNLLEEIRNAPSTNMMMNQLPNPNDLAMSTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLMKDGFFAPANVGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01095 215 PANTHER PROTEIN YABBY 6-RELATED 1 191 IPR006780 GO:0007275
Pumo7g01095 215 CDD HMG-box_SF 133 169 - -
Pumo7g01095 215 SUPERFAMILY HMG-box 120 173 IPR036910 -
Pumo7g01095 215 Gene3D High mobility group box domain 116 197 IPR036910 -
Pumo7g01095 215 FunFam Axial regulator YABBY 124 196 - -
Pumo7g01095 215 Pfam YABBY protein 16 179 IPR006780 GO:0007275
Pumo7g01095 215 MobiDBLite consensus disorder prediction 101 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01095 Pumo-Chr7 20890727 20894077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01095 27 213 C2C2-YABBY Transcription Factor Family AT4G00180 63.636 3.49e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pumo7g01095 YABBY 7.1e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01095 K25796 - gmx:100781267 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01095 7 20890727 20894077 Pumo7g01095 7 20890727 20894077 ECH