Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01088 ATGGATTTGAGCGAAGAAGTTAGGGCAGCTCACAAGCGAGAAATCGCTGATTTCTTGGATCAAGATGTGGGAAAGGGCATATACATGGACCATATAAAAAAAACCATAATCAACCAAAAGCGCCACCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGTGACTTGGGTAACAGAATTCTGAGGAGTCCAAGTGAGTACATGCAAGCGTTCTGTGATGCGGTGACGGAGGCTACTCGTGCTATTGATCCCAAGTATTTGAAGGAAGGAGAACAAGTGCATGTGGGATTTGAAGGCCCTTTTGTTTCTCGCCTGTGTCACACCCAGGGAACTTATCTCTCAATTCATAGGTTCTATGGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACTGGAAACTTCACTTCTCGTGAATATCGTGATATTACATCTAATTTGGGTTTGCCCACAGGATCTGTTTACCCTGCAAGGGATGAAAATGGCAACTTACTTGTGACCGAGTTTGGATTGTGCAAATACAAAGATCATCAAACTTTGTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAACAGTGGATGTCATTGTAGAAGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCTATTGTGGGGATATATAAGGCTCTTGCAGGGAAAAGCAAAAGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTTATGCACCAAGCTACAGTGCTGAAGATCTCAAAAACATTAAAAAGATAGCTGAAAGAGATGATGTATTTGACCTGCTAAGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGATTTTGTTGATGCTTGGTGGAGTGGAGAAGAACTTAACGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTTGGTGATCCCTCTGTTTCCAAGTCTCAACTATTGAGAGCAATTATGAATATTGCTCCCTTGGCCATATCAACTACAGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTACAGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGCGTCGCTATACATGAAGTTATGGAGCAGCAGACTGTAACTATTGCCAAAGCTGGTATCCATGCATCACTGAATGCCCGGTGCAGTGTGGTTGCTGCTGCAAATCCCATATTTGGAACTTATGATCGTTCACTGACTCCAACCAAAAATATTGGACTCCCAGACTCCTTGCTTTCTCGATTCGATCTACTGTTTATTGTGTTGGATCAAATGGATCCTGATATTGATCGTCGAATATCAGAGCATGTTCTTCGTATGCATCGATTTCGTTCTGCTGTTGATGGAGGAGAGGCAGTGCTTGATGGTAGCTCAAGATATGGAAGAGAAGATGAAGGTGATACAGACTCGTCTGTCTTTGTAAAATATAACAGAATGTTACACGGGAAGAAAACTGAAAGAGGTCCCAAACATGATACACTTACAATTAAGTTTCTTAAAAAATATATACACTATGCTAAGGCTAGCCATAGGATTCAACCTGAACTGACTAATGAGGCATGTGAGAACATTGCCACAGCCTATGCTGAGCTCAGAAATGCAAGTTCAAATGCAAAGACTGGAGGAACACTTCCCATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACAGCTCATGCCAAATTGAAGTTGAGCAGAGAGGTTTCAAAGTCTGATGTTGAAGCTGCTTTGAAGGTTCTAAATTTTGCAATATATCACCAAGAACTGATAGAAATGGAGGAGCGTGAGCAAGAGAGGGAGAGAGAGTTAGACAGGAAGCGCAGGGCTGATCATGATGAAAATGATCCTGATCGTGGTCCTAAAGATAAAAGAGGGTCAACATCAAAAGAAGTCGCTCCAGCTCCAGCTCAACCTCAACCTCAAGCTCAAGCTGTCGAACTCACCCCTGAAAGAATTGAAGCATTTAATGCACTATTTGGTCAGCATATGCGTGCCAACCGCATGGATGTCATACCTATTGCAGAGATACAGAATGTTATCAACAGAAGGGCAGATCCGCCTTACAGCACCGCAGATATGCTACTCCTACTACAGGTATGA 2256 0.4317 MDLSEEVRAAHKREIADFLDQDVGKGIYMDHIKKTIINQKRHRLIVNISDLHNFRDLGNRILRSPSEYMQAFCDAVTEATRAIDPKYLKEGEQVHVGFEGPFVSRLCHTQGTYLSIHRFYGSLVRPKVVKSVHFCPTTGNFTSREYRDITSNLGLPTGSVYPARDENGNLLVTEFGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGIYKALAGKSKSSVNGVFRTVLIANNVSLLNKEAYAPSYSAEDLKNIKKIAERDDVFDLLSNSLAPSIYGHSWIKKAVILLMLGGVEKNLTNGTHLRGDINMMMVGDPSVSKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIFGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISEHVLRMHRFRSAVDGGEAVLDGSSRYGREDEGDTDSSVFVKYNRMLHGKKTERGPKHDTLTIKFLKKYIHYAKASHRIQPELTNEACENIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSREVSKSDVEAALKVLNFAIYHQELIEMEEREQERERELDRKRRADHDENDPDRGPKDKRGSTSKEVAPAPAQPQPQAQAVELTPERIEAFNALFGQHMRANRMDVIPIAEIQNVINRRADPPYSTADMLLLLQV 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01088 751 Coils Coil 641 664 - -
Pumo7g01088 751 Gene3D - 2 100 - -
Pumo7g01088 751 SMART mcm 98 637 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 483 493 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 624 639 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 173 187 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 199 211 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 450 460 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pumo7g01088 751 Pfam MCM AAA-lid domain 548 633 IPR041562 -
Pumo7g01088 751 FunFam DNA helicase 127 181 - -
Pumo7g01088 751 SMART AAA_5 323 476 IPR003593 GO:0016887
Pumo7g01088 751 Gene3D - 171 259 IPR012340 -
Pumo7g01088 751 ProSiteProfiles MCM family domain profile. 281 487 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo7g01088 751 MobiDBLite consensus disorder prediction 645 680 - -
Pumo7g01088 751 FunFam DNA helicase 5 105 - -
Pumo7g01088 751 Pfam MCM N-terminal domain 12 98 IPR027925 -
Pumo7g01088 751 Gene3D - 262 657 IPR027417 -
Pumo7g01088 751 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 9 662 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pumo7g01088 751 SUPERFAMILY Nucleic acid-binding proteins 16 251 IPR012340 -
Pumo7g01088 751 Pfam MCM P-loop domain 269 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo7g01088 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 650 IPR027417 -
Pumo7g01088 751 ProSitePatterns MCM family signature. 390 398 IPR018525 GO:0003677|GO:0005524|GO:0006260
Pumo7g01088 751 Pfam MCM OB domain 122 230 IPR033762 -
Pumo7g01088 751 CDD MCM3 284 635 - -
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 469 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein family signature 410 423 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein family signature 322 337 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein family signature 434 446 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo7g01088 751 PRINTS Mini-chromosome maintenance (MCM) protein family signature 382 396 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pumo7g01088 751 MobiDBLite consensus disorder prediction 645 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01088 Pumo-Chr7 20741528 20747347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01088 1 569 Core DNA Replication Machinery Family AT5G46280 76.379 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01088 K02541 - gmx:100791302 1235.32