Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01035 ATGCTTGTTGTGTGTGCTAGTTCCTCTTCGCACCAGCCATGGGCCTCACCCATTCCCACACTCACCACACTCCCAAAATGCACAACCCCAGAACACGTGAACCAGCTCCACGCACGCATGATCACCACCGGGTTCATCAAAAACCCTTCCCTCACCGCAAAACTCGTTCTTTCTTTCATTTCCTCACCCAATGAGCCTCTCGTTGAGTTCGCTCGCTATGTTTTCTTCAAGCACCACGCTTTTTGCGGTTTCCGTGATGACCCTTTTCTCTGGAACGCTCTGATCAGGTCCCACTCTCACGGGCGTGACCCCAGAGGGGCTCTGGTTCTGCTCCGCTTGATGCTCGAAAATGGGGTGCGTTTGGATGGGTACTCGTTTTCCTTGGTTCTGAAGGCTTGTGCTAAGGTGGGTTTGGTGAGGGGGGGAATGCAGGTTCATGGGTTGTTGTGGAAGATGAATTTTGGGTCTGATGTGTTCTTGCAGAATTGTTTGATTGGGCTGTTTGTGAGATGCGGGTGTGTGGAGCTTGCACGGCAGGTGTTTGATAGAATGCCTGACCGGGATGTTGTTTCGTATAACTCGATGATTGATGGGTATGTGAAGTGTGGGGTGGTTGAGAGGGCACGTGAGTTGTTTGATGGTATGGAGGAGAGGAATTTGATTACTTGGAATTCGATGATCGGAGGGTATGTGAGGTGGGAAGAGGGGGTGGAGTTTGCTTGGAGTTTGTTTGTTAAAATGCCGGAGAGGGACTTGGTTTCGTGGAACACGATGATTGATGGTTGTGTAAAGCATGGGAGGATGGATGATGCTCGGGCATTGTTTGACGAGATGCCGGATAGGGATTCGGTAAGTTGGGTTACCATGATAGACGGTTATGCGAAGTCAGGTGATGTTCTAGCTGCAAGGCGGTTGTTTGATGAAATGCCGAGGAGAGATGTTATTTCTTGTAATTCAATGATGGCTGGTTATGTTCAGAATGGTTATTGCATTGAGGCTTTGAAAATATTTTATGATATGAAAAGGGCAGCAAATGTGGTGCCTGATGATACTACGTTGTTGATTGTAATTACAGCGTTTGCCCAATTGGGACACGTTGAAGATGGAGTTGTGATACATCATTATTTAATGGACAAGGGGTATTCTCTGAATGGTAAGCTTGGTGTTGCTCTAATTGACATGTATTCAAAGTGTGGTAGCATTGAGAATGCTATTTCAGTCTTTGAGAATGTTGAACAAAAATGTGTTGATCATTGGAACGCTATGATCGGTGGTTTAGCTATTCACGGAATGGGTGAAATGGCTTTCGAATTTCTCATGGAGATGGGAAGGCTTTCTGTTATTCCTGATGATATCACATTCATCGGAGTGTTGAGTGCTTGTAGGCATGCTGGAATGTTGAAGGAGGGGCTGATATGTTTTGAGCTCATGCAAAAAGTATACAAGCTGGAGCCTAAAGTGCAACACTATGGATGCATGGTGGATATGCTTAGCCGTGCAGGGCATGTTGAAGAAGCCAAGAAACTCATTGAGGAGATGCCTGTTGAACCCAATGATGTGATTTGGAAGACTCTACTTAGTGCTTGCCAAATTTACGAAAACTTCTCTATAGGAGAGCCTATAGCTCAGCAATTGACTCAGCTATATTCATGCAGTCCAAGTTCCTATGTGCTCCTGTCTAATATTTATGCCAGTTTGGGCATGTGGGACAATGTAAAGAGGGTTAGGACACAAATGAAAGAAAGACAACTAAAGAAAATTCCAGGTTGTAGTTGGATTGAACTGGGGGGAATTGTTCACCAGTTCTCTGTACAAGATAGGACACACCCTCAGGGTTTCTCCACCAACTCTTCTTCTAGTTGTTCCGCGCAGGCGCAGCAGACAGACAGAGAGAAAAACAGAGTGTCGTCCTTCAAACGCAGTAACCATGGGGCGTATGCACAGTCGCGGGGTATCTCCAGTTCGGCTCTTCCTTATAAGAGGACCCCACCTAGCTGGTTGAAGATCTCGTCTCAGGATGTGGAGGAGAACATCTGCAAGTTTGCAAAGAAAGGTCTTACTCCATCTCAAATTGGTGTTATTCTTCGTGACTCTCACGGAATTGCTCAGGTGAGGAGTGTCACCGGAAGCAAGATTCTCCGTATATTGAAGGCTCATGGGCTTGCTCCTGAAATTCCTGAAGACTTGTATCACCTCATCAAGAAGGCTGTCTCTATTAGGAAGCACTTGGAGAGGAACAGGAAGGACAAGGATTCTAAATTCAGGTTAATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTATAAGAAGACAAAGAAGCTTCCACCTGTGTGGAAATATGAATCAACAACTGCTAGCACTCTTGTGGCTTAG 2379 0.4594 MLVVCASSSSHQPWASPIPTLTTLPKCTTPEHVNQLHARMITTGFIKNPSLTAKLVLSFISSPNEPLVEFARYVFFKHHAFCGFRDDPFLWNALIRSHSHGRDPRGALVLLRLMLENGVRLDGYSFSLVLKACAKVGLVRGGMQVHGLLWKMNFGSDVFLQNCLIGLFVRCGCVELARQVFDRMPDRDVVSYNSMIDGYVKCGVVERARELFDGMEERNLITWNSMIGGYVRWEEGVEFAWSLFVKMPERDLVSWNTMIDGCVKHGRMDDARALFDEMPDRDSVSWVTMIDGYAKSGDVLAARRLFDEMPRRDVISCNSMMAGYVQNGYCIEALKIFYDMKRAANVVPDDTTLLIVITAFAQLGHVEDGVVIHHYLMDKGYSLNGKLGVALIDMYSKCGSIENAISVFENVEQKCVDHWNAMIGGLAIHGMGEMAFEFLMEMGRLSVIPDDITFIGVLSACRHAGMLKEGLICFELMQKVYKLEPKVQHYGCMVDMLSRAGHVEEAKKLIEEMPVEPNDVIWKTLLSACQIYENFSIGEPIAQQLTQLYSCSPSSYVLLSNIYASLGMWDNVKRVRTQMKERQLKKIPGCSWIELGGIVHQFSVQDRTHPQGFSTNSSSSCSAQAQQTDREKNRVSSFKRSNHGAYAQSRGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01035 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Pumo7g01035 792 ProSitePatterns Ribosomal protein S15 signature. 739 769 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pumo7g01035 792 Pfam E motif 532 594 IPR046848 -
Pumo7g01035 792 FunFam 40S ribosomal protein S13 676 723 - -
Pumo7g01035 792 MobiDBLite consensus disorder prediction 609 631 - -
Pumo7g01035 792 SMART Ribosomal_S13_N_2 643 701 IPR012606 GO:0003735|GO:0005840|GO:0006412
Pumo7g01035 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Pumo7g01035 792 Gene3D - 676 723 - -
Pumo7g01035 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Pumo7g01035 792 SMART Ribosomal_S15_2 711 790 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pumo7g01035 792 Pfam Ribosomal protein S15 715 784 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pumo7g01035 792 FunFam Pentatricopeptide repeat-containing protein 389 623 - -
Pumo7g01035 792 SUPERFAMILY S15/NS1 RNA-binding domain 707 783 IPR009068 -
Pumo7g01035 792 Gene3D Tetratricopeptide repeat domain 56 148 IPR011990 GO:0005515
Pumo7g01035 792 Gene3D Tetratricopeptide repeat domain 236 312 IPR011990 GO:0005515
Pumo7g01035 792 Gene3D Tetratricopeptide repeat domain 313 387 IPR011990 GO:0005515
Pumo7g01035 792 Gene3D Tetratricopeptide repeat domain 149 235 IPR011990 GO:0005515
Pumo7g01035 792 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 243 623 IPR046960 GO:0003723|GO:0009451
Pumo7g01035 792 Pfam PPR repeat 253 281 IPR002885 -
Pumo7g01035 792 Pfam PPR repeat 221 250 IPR002885 -
Pumo7g01035 792 Pfam PPR repeat 490 514 IPR002885 -
Pumo7g01035 792 Pfam PPR repeat 190 219 IPR002885 -
Pumo7g01035 792 Pfam PPR repeat 90 119 IPR002885 -
Pumo7g01035 792 Pfam PPR repeat 390 413 IPR002885 -
Pumo7g01035 792 Pfam PPR repeat 162 188 IPR002885 -
Pumo7g01035 792 Pfam Ribosomal S13/S15 N-terminal domain 646 701 IPR012606 GO:0003735|GO:0005840|GO:0006412
Pumo7g01035 792 Gene3D - 724 792 - -
Pumo7g01035 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Pumo7g01035 792 FunFam 40S ribosomal protein S13 724 792 - -
Pumo7g01035 792 Hamap 30S ribosomal protein S15 [rpsO]. 634 790 IPR023029 -
Pumo7g01035 792 MobiDBLite consensus disorder prediction 609 649 - -
Pumo7g01035 792 Pfam PPR repeat family 415 461 IPR002885 -
Pumo7g01035 792 Pfam PPR repeat family 312 361 IPR002885 -
Pumo7g01035 792 CDD Ribosomal_S15p_S13e 711 784 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pumo7g01035 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Pumo7g01035 792 Gene3D Tetratricopeptide repeat domain 388 635 IPR011990 GO:0005515
Pumo7g01035 792 NCBIfam pentatricopeptide repeat 284 314 IPR002885 -
Pumo7g01035 792 NCBIfam pentatricopeptide repeat 221 253 IPR002885 -
Pumo7g01035 792 NCBIfam pentatricopeptide repeat 490 513 IPR002885 -
Pumo7g01035 792 NCBIfam pentatricopeptide repeat 90 122 IPR002885 -
Pumo7g01035 792 NCBIfam pentatricopeptide repeat 162 190 IPR002885 -
Pumo7g01035 792 NCBIfam pentatricopeptide repeat 253 282 IPR002885 -
Pumo7g01035 792 NCBIfam pentatricopeptide repeat 315 349 IPR002885 -
Pumo7g01035 792 NCBIfam pentatricopeptide repeat 190 219 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01035 Pumo-Chr7 19563520 19568653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01035 646 792 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 89.796 1.46e-88 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01035 - - gmx:100788616 1165.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01035 7 19563520 19568653 Pumo7g01035 7 19563520 19568653 ECH