Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo7g01035 | ATGCTTGTTGTGTGTGCTAGTTCCTCTTCGCACCAGCCATGGGCCTCACCCATTCCCACACTCACCACACTCCCAAAATGCACAACCCCAGAACACGTGAACCAGCTCCACGCACGCATGATCACCACCGGGTTCATCAAAAACCCTTCCCTCACCGCAAAACTCGTTCTTTCTTTCATTTCCTCACCCAATGAGCCTCTCGTTGAGTTCGCTCGCTATGTTTTCTTCAAGCACCACGCTTTTTGCGGTTTCCGTGATGACCCTTTTCTCTGGAACGCTCTGATCAGGTCCCACTCTCACGGGCGTGACCCCAGAGGGGCTCTGGTTCTGCTCCGCTTGATGCTCGAAAATGGGGTGCGTTTGGATGGGTACTCGTTTTCCTTGGTTCTGAAGGCTTGTGCTAAGGTGGGTTTGGTGAGGGGGGGAATGCAGGTTCATGGGTTGTTGTGGAAGATGAATTTTGGGTCTGATGTGTTCTTGCAGAATTGTTTGATTGGGCTGTTTGTGAGATGCGGGTGTGTGGAGCTTGCACGGCAGGTGTTTGATAGAATGCCTGACCGGGATGTTGTTTCGTATAACTCGATGATTGATGGGTATGTGAAGTGTGGGGTGGTTGAGAGGGCACGTGAGTTGTTTGATGGTATGGAGGAGAGGAATTTGATTACTTGGAATTCGATGATCGGAGGGTATGTGAGGTGGGAAGAGGGGGTGGAGTTTGCTTGGAGTTTGTTTGTTAAAATGCCGGAGAGGGACTTGGTTTCGTGGAACACGATGATTGATGGTTGTGTAAAGCATGGGAGGATGGATGATGCTCGGGCATTGTTTGACGAGATGCCGGATAGGGATTCGGTAAGTTGGGTTACCATGATAGACGGTTATGCGAAGTCAGGTGATGTTCTAGCTGCAAGGCGGTTGTTTGATGAAATGCCGAGGAGAGATGTTATTTCTTGTAATTCAATGATGGCTGGTTATGTTCAGAATGGTTATTGCATTGAGGCTTTGAAAATATTTTATGATATGAAAAGGGCAGCAAATGTGGTGCCTGATGATACTACGTTGTTGATTGTAATTACAGCGTTTGCCCAATTGGGACACGTTGAAGATGGAGTTGTGATACATCATTATTTAATGGACAAGGGGTATTCTCTGAATGGTAAGCTTGGTGTTGCTCTAATTGACATGTATTCAAAGTGTGGTAGCATTGAGAATGCTATTTCAGTCTTTGAGAATGTTGAACAAAAATGTGTTGATCATTGGAACGCTATGATCGGTGGTTTAGCTATTCACGGAATGGGTGAAATGGCTTTCGAATTTCTCATGGAGATGGGAAGGCTTTCTGTTATTCCTGATGATATCACATTCATCGGAGTGTTGAGTGCTTGTAGGCATGCTGGAATGTTGAAGGAGGGGCTGATATGTTTTGAGCTCATGCAAAAAGTATACAAGCTGGAGCCTAAAGTGCAACACTATGGATGCATGGTGGATATGCTTAGCCGTGCAGGGCATGTTGAAGAAGCCAAGAAACTCATTGAGGAGATGCCTGTTGAACCCAATGATGTGATTTGGAAGACTCTACTTAGTGCTTGCCAAATTTACGAAAACTTCTCTATAGGAGAGCCTATAGCTCAGCAATTGACTCAGCTATATTCATGCAGTCCAAGTTCCTATGTGCTCCTGTCTAATATTTATGCCAGTTTGGGCATGTGGGACAATGTAAAGAGGGTTAGGACACAAATGAAAGAAAGACAACTAAAGAAAATTCCAGGTTGTAGTTGGATTGAACTGGGGGGAATTGTTCACCAGTTCTCTGTACAAGATAGGACACACCCTCAGGGTTTCTCCACCAACTCTTCTTCTAGTTGTTCCGCGCAGGCGCAGCAGACAGACAGAGAGAAAAACAGAGTGTCGTCCTTCAAACGCAGTAACCATGGGGCGTATGCACAGTCGCGGGGTATCTCCAGTTCGGCTCTTCCTTATAAGAGGACCCCACCTAGCTGGTTGAAGATCTCGTCTCAGGATGTGGAGGAGAACATCTGCAAGTTTGCAAAGAAAGGTCTTACTCCATCTCAAATTGGTGTTATTCTTCGTGACTCTCACGGAATTGCTCAGGTGAGGAGTGTCACCGGAAGCAAGATTCTCCGTATATTGAAGGCTCATGGGCTTGCTCCTGAAATTCCTGAAGACTTGTATCACCTCATCAAGAAGGCTGTCTCTATTAGGAAGCACTTGGAGAGGAACAGGAAGGACAAGGATTCTAAATTCAGGTTAATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTATAAGAAGACAAAGAAGCTTCCACCTGTGTGGAAATATGAATCAACAACTGCTAGCACTCTTGTGGCTTAG | 2379 | 0.4594 | MLVVCASSSSHQPWASPIPTLTTLPKCTTPEHVNQLHARMITTGFIKNPSLTAKLVLSFISSPNEPLVEFARYVFFKHHAFCGFRDDPFLWNALIRSHSHGRDPRGALVLLRLMLENGVRLDGYSFSLVLKACAKVGLVRGGMQVHGLLWKMNFGSDVFLQNCLIGLFVRCGCVELARQVFDRMPDRDVVSYNSMIDGYVKCGVVERARELFDGMEERNLITWNSMIGGYVRWEEGVEFAWSLFVKMPERDLVSWNTMIDGCVKHGRMDDARALFDEMPDRDSVSWVTMIDGYAKSGDVLAARRLFDEMPRRDVISCNSMMAGYVQNGYCIEALKIFYDMKRAANVVPDDTTLLIVITAFAQLGHVEDGVVIHHYLMDKGYSLNGKLGVALIDMYSKCGSIENAISVFENVEQKCVDHWNAMIGGLAIHGMGEMAFEFLMEMGRLSVIPDDITFIGVLSACRHAGMLKEGLICFELMQKVYKLEPKVQHYGCMVDMLSRAGHVEEAKKLIEEMPVEPNDVIWKTLLSACQIYENFSIGEPIAQQLTQLYSCSPSSYVLLSNIYASLGMWDNVKRVRTQMKERQLKKIPGCSWIELGGIVHQFSVQDRTHPQGFSTNSSSSCSAQAQQTDREKNRVSSFKRSNHGAYAQSRGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA | 792 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo7g01035 | 792 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 251 | 285 | IPR002885 | - | |
| Pumo7g01035 | 792 | ProSitePatterns | Ribosomal protein S15 signature. | 739 | 769 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 | |
| Pumo7g01035 | 792 | Pfam | E motif | 532 | 594 | IPR046848 | - | |
| Pumo7g01035 | 792 | FunFam | 40S ribosomal protein S13 | 676 | 723 | - | - | |
| Pumo7g01035 | 792 | MobiDBLite | consensus disorder prediction | 609 | 631 | - | - | |
| Pumo7g01035 | 792 | SMART | Ribosomal_S13_N_2 | 643 | 701 | IPR012606 | GO:0003735|GO:0005840|GO:0006412 | |
| Pumo7g01035 | 792 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 188 | 222 | IPR002885 | - | |
| Pumo7g01035 | 792 | Gene3D | - | 676 | 723 | - | - | |
| Pumo7g01035 | 792 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 415 | 449 | IPR002885 | - | |
| Pumo7g01035 | 792 | SMART | Ribosomal_S15_2 | 711 | 790 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 |
Showing 1 to 10 of 44 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo7g01035 | - | - | gmx:100788616 | 1165.98 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo7g01035 | 7 | 19563520 | 19568653 | Pumo7g01035 | 7 | 19563520 | 19568653 | ECH |
Showing 1 to 1 of 1 entries