Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01031 ATGGAAGATTCTGATCAACCAGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGTGTGTAGTTTTTTCAGAAAACCGGTTAATAAAAAGAATATAAGGAAACGAACTATTGATAATGAAGATAATGAGGAGGACTCAAACAAAGAATCTTCTCTGTTGCATATTCAGAAGAAGACCTTAAAGCCTGACAATAAGTTGTACTTTTCCACTGGTTCTTCAAAAAGCTCTGCATCTGCTGAACCAAGTGAAGAATTGGGAAAACCAATCTTTCAGTTCGAGTCTTCTAAAGAGATTCAAGTTCAACATGATAACAAAGCAACAGCAACTCTAGAGACCGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCAGAGGAGAGTCTGAAAGGGAAAAGTGCAAACTCTGAAAATGAAAAATTATATAAGGGAATTAACAGTTACAAAGACTACAAGGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGGTCACATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGCAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGATGGAGAAGGAGTGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGAGAGGATGCGGATGAGGAGGGTGCTAATTTGACTGATGAAGATGATGATGATTCGTTACCATTTGCATGTTTCATTTGCAGAAACCCTTTTGTGGATCCTGTAGAAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACGCTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCCGAGGATAAATCATAA 990 0.4051 MEDSDQPAKSAENQQTEQVCSFFRKPVNKKNIRKRTIDNEDNEEDSNKESSLLHIQKKTLKPDNKLYFSTGSSKSSASAEPSEELGKPIFQFESSKEIQVQHDNKATATLETETEFSKDARAIRERALKQAEESLKGKSANSENEKLYKGINSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKMRLAAGEDADEEGANLTDEDDDDSLPFACFICRNPFVDPVETKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDKS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01031 329 SMART ring_2 269 306 IPR001841 -
Pumo7g01031 329 SUPERFAMILY RING/U-box 268 311 - -
Pumo7g01031 329 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Pumo7g01031 329 PANTHER ZINC FINGER PROTEIN 183 1 328 IPR039971 -
Pumo7g01031 329 MobiDBLite consensus disorder prediction 1 84 - -
Pumo7g01031 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Pumo7g01031 329 FunFam RING finger protein 113A 267 326 - -
Pumo7g01031 329 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
Pumo7g01031 329 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Pumo7g01031 329 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Pumo7g01031 329 FunFam Zinc finger CCCH domain-containing protein 1 190 224 - -
Pumo7g01031 329 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Pumo7g01031 329 MobiDBLite consensus disorder prediction 63 80 - -
Pumo7g01031 329 MobiDBLite consensus disorder prediction 32 61 - -
Pumo7g01031 329 CDD RING-HC_RNF113A_B 262 315 - -
Pumo7g01031 329 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Pumo7g01031 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
Pumo7g01031 329 MobiDBLite consensus disorder prediction 8 22 - -
Pumo7g01031 329 Gene3D - 190 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01031 Pumo-Chr7 19431174 19435241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01031 7 329 C2H2 Transcription Factor Family AT1G01350 68.731 2.39e-168 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo7g01031 zf-C3HC4_3 9.5e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01031 K13127 - gmx:100787434 621.313