Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01017 ATGGAAGCCAGAGAAGGCATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTACCATGTGGCGCCGAGGAGTGAAGCTCCAAACCAGGTTCATGTCCCTGATGGTGCTGCTGCTACAGCTGCACCACCTGTTGGTGTCTCACCTGTGAGTGTGGGGTTGGATGGAGCAGCAGTTAAGAAGAAACGGGGTAGACCGAGGAAATATGGGCCTGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATCTCGTCTTCTGCTCCGCCTTCTAATGACTTTTCATCCGGGAAGCGGGGGAAAATGCGGGGGATGGACTATAAACAGTCGAAAAAAGTTGGTTTGGATTATCTAGGTGACTTGAATGCATGCTCTGATGGTACGAATTTTATGCCTCATATCATCACTGTCAATGCTGGCGAGGACATTACGATGAAGGTGATATCCTTTTCTCAACAAGGGCCACGAGCTATATGTATCTTATCTGCTAATGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCCGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCCGGTGGAATGTCTGTCTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGTGGAGTTGCTGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGAAATGCTGAAAGTTGATGAGATGGGTGATAAGGTGGGAACCCATGGTGTTGGAGGCCTGTTTCTGAATCAGGCGATGGGAACAATGGTTGTCTTAACAGAGCAACGCCCCAATTGA 843 0.4887 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGAAATAAPPVGVSPVSVGLDGAAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPPSNDFSSGKRGKMRGMDYKQSKKVGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQEMLKVDEMGDKVGTHGVGGLFLNQAMGTMVVLTEQRPN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01017 280 ProSiteProfiles PPC domain profile profile. 130 280 IPR005175 -
Pumo7g01017 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 133 245 - -
Pumo7g01017 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 245 IPR005175 -
Pumo7g01017 280 MobiDBLite consensus disorder prediction 82 97 - -
Pumo7g01017 280 FunFam AT-hook motif nuclear-localized protein 1-like 135 256 - -
Pumo7g01017 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 242 IPR039605 GO:0003680
Pumo7g01017 280 Gene3D - 135 255 - -
Pumo7g01017 280 MobiDBLite consensus disorder prediction 26 104 - -
Pumo7g01017 280 CDD DUF296 135 225 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01017 Pumo-Chr7 18812981 18822466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01017 10 242 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 61.154 7.55e-95 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01017 - - gmx:100796830 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01017 7 18812981 18822466 Pumo7g01017 7 18812981 18822466 ECH
Pumo5g01143 5 25619715 25624650 Pumo7g01017 7 18812981 18822466 PCT