Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00973 ATGGGTAGAGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATCATTTTCTCAAGCCGTGGCAAGCTCTATGAATTTGGAAATGTTGGGATTACCAAAACTATTGAGCGATACCAACGTTGCTCTTTTACTCCTCAAGATGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAGGACCCAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAACATAAAGGAGTTGCAGAATCTTGAGAAACAGCTTGAAGGGGCTTTAGCACAAGCTAGGCAAAGGAAGACACAAATCATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAGCGCCATCTCGGAGACATGAATAAGCAACTTAAACTCAAGCTTGAAGCAGAGGGATTTAATCTTAAAGCTATGGAAAGCTTGTGGAGCTCTACCTCAGCTGCTGGAAATAGTGGTGGCTTTCCCTTTCAGCCTCCTCAAACAAATCCTATGGATTACCACCAGGCAGAACCCTTTTTACAAATAGGGTACCATCAATATGTTCAAGCTGAGGCATCTAATGTTCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATCCTTTGA 738 0.4404 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNVGITKTIERYQRCSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLKLKLEAEGFNLKAMESLWSSTSAAGNSGGFPFQPPQTNPMDYHQAEPFLQIGYHQYVQAEASNVPKSMACETNFMQGWIL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00973 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo7g00973 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo7g00973 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 184 - -
Pumo7g00973 245 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo7g00973 245 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Pumo7g00973 245 Coils Coil 148 168 - -
Pumo7g00973 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo7g00973 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo7g00973 245 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pumo7g00973 245 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Pumo7g00973 245 FunFam MADS-box transcription factor 1 13 87 - -
Pumo7g00973 245 Coils Coil 119 142 - -
Pumo7g00973 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo7g00973 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo7g00973 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo7g00973 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00973 Pumo-Chr7 17902594 17908045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00973 1 245 MADS-box Gene Family AT2G45650 66.403 7.71e-113 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo7g00973 K-box 4.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00973 K09264 - gmx:100820061 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00973 7 17902594 17908045 Pumo7g00973 7 17902594 17908045 ECH