Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00972 ATGGTGAGGGGAAAGACTCAGATGAAGCGTATAGAGAACGCCACAAGCAGGCAAGTAACTTTCTCAAAGCGGCGAAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTGCTAGCTCCAGCATGCAGGAGACAATTGAACGATACCGCAGGCATACCAAGAATGACAATCCAACTACATTGAGATCAGTTGAACAAAATATGCAGCATTTGAAGCAAGAAGCTGCAATCATGATGAAGAAGATTGACCTTCTTGAAGCTGCAAAACGGAAATTCTTGGGAGAAGGTTTGGGGGCTTGCTCCATTGAGGAACTGCAACAGATAGAACAACAGTTGGAGAGGAGTTTAAGTAATGTTAGAGCAAGAAAGGTCCAGGTTTTCAAGGAGCAAATTGAGGAACTAAAAGAAAAGGAAAAAGCCCTACTAGAAGAAAATGCCAAGCTCTCTGAAAATGCCAGGCTCTCTGCGAAGCATGGCATCCATCTAGAGCCAGCAACAAAGAATCAGAATGAGAATCAACCCCAATACAACCCAGAAAGTAGTCCAAGTTCAGATGTGGAGACCGAATTGTTCATTGGACTTCCAGATACAAGAACAAGACGCATCTCTAATCAGGTCTAG 681 0.4376 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHTKNDNPTTLRSVEQNMQHLKQEAAIMMKKIDLLEAAKRKFLGEGLGACSIEELQQIEQQLERSLSNVRARKVQVFKEQIEELKEKEKALLEENAKLSENARLSAKHGIHLEPATKNQNENQPQYNPESSPSSDVETELFIGLPDTRTRRISNQV 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00972 226 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
Pumo7g00972 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo7g00972 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo7g00972 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo7g00972 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo7g00972 226 Coils Coil 144 171 - -
Pumo7g00972 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo7g00972 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo7g00972 226 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo7g00972 226 ProSiteProfiles K-box domain profile. 88 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo7g00972 226 FunFam MADS-box protein SOC1 14 96 - -
Pumo7g00972 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo7g00972 226 MobiDBLite consensus disorder prediction 185 207 - -
Pumo7g00972 226 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Pumo7g00972 226 MobiDBLite consensus disorder prediction 183 226 - -
Pumo7g00972 226 Coils Coil 122 142 - -
Pumo7g00972 226 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Pumo7g00972 226 Coils Coil 81 108 - -
Pumo7g00972 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00972 Pumo-Chr7 17861774 17882546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00972 1 159 MADS-box Gene Family AT2G45660 79.874 4.69e-87 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo7g00972 K-box 5.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00972 - - gmx:100807963 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00972 7 17861774 17882546 Pumo7g00972 7 17861774 17882546 ECH