Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00948 ATGGTGGAAGCTAGAAAAGATGAGGTAGCAGCTGATGCCCGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTGCCTGTTGCTCTTGCTAATGCAAGAGAGGTTAAGGGGTTCCCTGGGAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCGTCGCGTTTATCGGACTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCGAAGACACTTAAAGAGGCCATTGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTACGAGGGCAAGCTTCGGATGCAGAGTGATCTTGATGCATTAATCGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACTGGCGTGCTTGGTGAAGCTACTTTGCCATTAACCGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACAATATAAGAGAACTACTTGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTAGACAGACTCTATGAAGTTATGAAAGAGGATGAGAAGAATGTTTTGTCTGTTCTTGGTAGGAGCAATGTTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCAAGGATAAGGGAGAAGACGGTTACTGTTATATGCTCTCTTGTGGAATCGGGGAGCTGTGAAAAGTGGTTAGTTTCTGAAGGAGTTCTGCCACCTCTTATAAGACTTGTTGAATCTGGTAGTGCTGTGGGTAAAGAGAAGGCTACTGTATCTCTTCAGAGATTATCAATGTCAGCTGAAACAACTCGTGCAATTGTTGGACACGGTGGCGTTCGGCCATTGATTGAGCTTTGTCAAAGTGGTGATTCTGTGTCACAGGCTGCTGCTGCCTGTACTTTGGCAAATGTATCAACTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTGAAGGTTATGATCAATCTTCTTAATTGTGGAATTTTATTAGGTTCCAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTCACTTCAAGCAATGAGCATCTGAGAAAGTTTGTGATATCAGAAGGCGGTGTTAGGAGTCTTCTGGCCTATCTTGATGGTCCACTTCCCCAAGAATCTGAAGTTGGAGCATTGAGGAATCTGGTTGGTTCAGTTTCTGAGGAAACTTTGGTTTCTCTTGGTTTGCTTCCGCGTTTGGTTCACGTGCTGAAGTCCGGATCGTTGGGTGCTCAACAAGCCGCCGCGTCTATCATCGGCTGTGTTTGCAGCTCAATGGAGATGAAGAAAATAGTTGGTGAAACCGGGTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAATCAAATGCTGCTAGAGAGGTTGCTGCTCAAGTGATTTCAAGCCTAATGGTGCTGTCCCAGAATCGGAGAGAGGTTAAGAAGGATGATAAAAGTGTGCCAAATCTAGTCCAGTTGCTTGATCCAAGCCCTCAGAACACTGCAAAAAAGTATGCAGTTTCTTGCCTTGGATCACTCTCTCCAAGTAAGAAATGTAAGAAACTGATGATTTCGTATGGAGCAATAGGGTATCTGAAGAAGCTTACAGAGATGGACATTCCAGGAGCTAAAAAGCTACTTGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1683 0.4468 MVEARKDEVAADARSTEDWLLHAQELVPVALANAREVKGFPGRWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALIGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYEVMKEDEKNVLSVLGRSNVAALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVGKEKATVSLQRLSMSAETTRAIVGHGGVRPLIELCQSGDSVSQAAAACTLANVSTVPEVRQALAEEGIVKVMINLLNCGILLGSKEYAAECLQNLTSSNEHLRKFVISEGGVRSLLAYLDGPLPQESEVGALRNLVGSVSEETLVSLGLLPRLVHVLKSGSLGAQQAAASIIGCVCSSMEMKKIVGETGCIPLLIKMLEAKSNAAREVAAQVISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSPSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKLRSLFSRK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00948 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 558 - -
Pumo7g00948 560 SMART arm_5 267 307 IPR000225 GO:0005515
Pumo7g00948 560 SMART arm_5 351 389 IPR000225 GO:0005515
Pumo7g00948 560 SMART arm_5 308 349 IPR000225 GO:0005515
Pumo7g00948 560 SMART arm_5 185 225 IPR000225 GO:0005515
Pumo7g00948 560 SMART arm_5 471 513 IPR000225 GO:0005515
Pumo7g00948 560 SMART arm_5 390 429 IPR000225 GO:0005515
Pumo7g00948 560 SMART arm_5 430 470 IPR000225 GO:0005515
Pumo7g00948 560 Pfam Armadillo/beta-catenin-like repeat 269 306 IPR000225 GO:0005515
Pumo7g00948 560 Gene3D - 146 376 IPR011989 -
Pumo7g00948 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Pumo7g00948 560 SUPERFAMILY ARM repeat 156 537 IPR016024 -
Pumo7g00948 560 Gene3D - 377 550 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00948 Pumo-Chr7 17422364 17425860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00948 206 479 U-box Gene Family AT3G54790 26.619 6.07e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00948 - - gmx:100809488 986.867