Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00941 ATGGGTACTGATACCAATTTGGTGACTACTGCCATTGGGTTTGGTTTGAGTGCAACTTTCATTGTATTTGTTTGCACAAGAATAATTTGTGGAAGACTACGAGAGCGATCACGGACTATATATGAAATTGAACCAAGAACAGATATAGAACGGGCAGAATATCATGGTAATGACCCTGAACCTGCTTTTGTTGCTGCAATCCCCACTTTGAATTTCAACCATGAAGCCTTCAGTTCAATTGAAACTACTCAGTGTGTGATATGTTTGGCAGAGTACGAAGAAAAAGAACTGTTGCGCATCATACCAAAATGTGGACACACTTTTCACCTTTCTTGCATTGATATGTGGCTGAGAAAACAATCAACATGTCCAGTGTGCCGTTTGTCACTGCAGAATGCTTCTGAAGCAAAACATGTGAGACATGTAACATTTACCATCAGGCATTCTCTTGATGAGTCCAATGCTGCAGAAAGGAACACAGATAGTGAGAGGCAAGTTGAACTTAATTCTAGTAACAACTCCCAACAATCAACTTTGGGAGAACCAGAAGCTAGACAGTGA 561 0.4046 MGTDTNLVTTAIGFGLSATFIVFVCTRIICGRLRERSRTIYEIEPRTDIERAEYHGNDPEPAFVAAIPTLNFNHEAFSSIETTQCVICLAEYEEKELLRIIPKCGHTFHLSCIDMWLRKQSTCPVCRLSLQNASEAKHVRHVTFTIRHSLDESNAAERNTDSERQVELNSSNNSQQSTLGEPEARQ 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00941 186 CDD RING-H2_EL5-like 84 127 - -
Pumo7g00941 186 Pfam Ring finger domain 84 127 IPR001841 -
Pumo7g00941 186 MobiDBLite consensus disorder prediction 153 186 - -
Pumo7g00941 186 MobiDBLite consensus disorder prediction 165 186 - -
Pumo7g00941 186 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Pumo7g00941 186 SUPERFAMILY RING/U-box 84 133 - -
Pumo7g00941 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 133 IPR013083 -
Pumo7g00941 186 PANTHER OS11G0150450 PROTEIN 1 175 - -
Pumo7g00941 186 SMART ring_2 85 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00941 Pumo-Chr7 17302227 17304171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00941 75 165 C3H Transcription Factor Family AT4G10160 40.659 1.84e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00941 - - gmx:100810553 335.495