Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00939 ATGGCTGGATCTGAAGCTACAAAATATGCTTCTGCTACAAGTCCTTCTACAACCACTGCTACAACAAACAACATGTCCAAATCAAACACCAAGCCAACCATGATCAGAAGGTTCATTGGGGTGAGGCAAAGACCCTCAGGGAGGTGGGTGGCTGAGATCAAAGACTCTTCTCAGCATGTGAGGTTGTGGCTTGGAACCTATGACACCCCAGAAGATGCTGCAAGGGCTTATGATGAAGCCGCAAGAGCTTTAAGAGGTGAAAATGCTCGAACCAACTTTGCACCAGTGAGCCAAGTCACAAGCCAACTGGGTCATCACCAACCAGGGTCTAATATACCAACTGGGTCTGATGGGAAGCATGGTTTGAGCTTTGCTTCCTTGAAGGCCAAGCTGAGCAAGAATCTTCAGAACATTATGGCAAGGGCAAGTGATCACAACAACAACAAGTCCTCAAAGAGTAGGGTGAGTGACCACTTCACCTTTGCCAGCATCTTCCACCGCAGGAGCTGCTACCAAATCCCTGAAGGGGACATGAGGAACATTGAGAAGGTGGTGCAGCCTAGTATTATTGTGCCTCCTATGGAAGGTGGTGGTGGAGGTGATTATTCTCCTTCTGTTGCCAACTGGGAAAGTGCTTCTAGTGTCTCTGATTGCAGCTCTGAGTGGGTAGGGTTCGGGAATTCGAAAGTCGGGTTGGAGTCGGACGGGTCGGAATTTGGGGAGGCTAGTGTTGGTGATCAAGGGTTCTTGGAGCAGTTGATGGGGTGGGTTGAAAGCCCTGATGTTAGTGATCAAGGTGAGGGTTCAAGGAGTAAGAGGTTCAAGGTGTCTTCTTCTGTGCTTGTGCCACCAACCTTCACTGGCTCTCCTTATGATTGTGGATCCCCTTATAGTGGTTATGCCTCTCCATATAATAACGGTTATGCCTCTCCTTATAACAACGGTTGTGCCTCACCTTGTAATGGCTATGCTTCTCCTTATTACAATAAGAAGTGA 996 0.4819 MAGSEATKYASATSPSTTTATTNNMSKSNTKPTMIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEDAARAYDEAARALRGENARTNFAPVSQVTSQLGHHQPGSNIPTGSDGKHGLSFASLKAKLSKNLQNIMARASDHNNNKSSKSRVSDHFTFASIFHRRSCYQIPEGDMRNIEKVVQPSIIVPPMEGGGGGDYSPSVANWESASSVSDCSSEWVGFGNSKVGLESDGSEFGEASVGDQGFLEQLMGWVESPDVSDQGEGSRSKRFKVSSSVLVPPTFTGSPYDCGSPYSGYASPYNNGYASPYNNGCASPCNGYASPYYNKK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00939 331 MobiDBLite consensus disorder prediction 7 32 - -
Pumo7g00939 331 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Pumo7g00939 331 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Pumo7g00939 331 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Pumo7g00939 331 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 155 - -
Pumo7g00939 331 MobiDBLite consensus disorder prediction 1 32 - -
Pumo7g00939 331 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Pumo7g00939 331 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Pumo7g00939 331 Coils Coil 128 148 - -
Pumo7g00939 331 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Pumo7g00939 331 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Pumo7g00939 331 SUPERFAMILY DNA-binding domain 38 94 IPR016177 GO:0003677
Pumo7g00939 331 CDD AP2 37 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00939 Pumo-Chr7 17278271 17279266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00939 37 94 AP2-EREBP Transcription Factor Family AT5G19790 72.414 3.11e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo7g00939 AP2 7.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00939 K09286 - gmx:100799444 539.265