Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00937 ATGAGGCCTGTTTTCTGCGGAAACCTGGATTTCGACGCGCGCCAATCCGATGTCGAGAGGCTCTTCAGAAGATACGGCAAGGTTGATAGAGTCGACATGAAATCCGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGACGTCGCATACGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGATTCAAAAAAATCTTCATCTAATTCAAGACCATCCAAGACTTTGTTTGTTATAAATTTTGATCCAGTTCACACCAGGACAAGGGATCTGGAGAGACATTTTGATCCCTATGGGAAAATATTAAATATAAGGATCAGAAGGAACTTTGCTTTTATTCAGTATGAATCCCAGGAGGATGCTACTAGAGCTCTGGAAGCGACCAACCTGAGCAAGTTCATGGACCGTGTTATCACAGTGGAGTATGCCATAAGAGATGATGATGACAGAGACAGAAGGAATGGATATAGTCCTGAAAGAAGAGGTCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCTAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGCCATGGATCAAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTACGAACGAGCTGAAAGCCCGATAAATGGGAGATATGATAGCCGGTCTCCCCCATCCCGAGATAGGTCCCGATCCTGA 756 0.4563 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSKKSSSNSRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDRRNGYSPERRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYERAESPINGRYDSRSPPSRDRSRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00937 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Pumo7g00937 251 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Pumo7g00937 251 MobiDBLite consensus disorder prediction 169 251 - -
Pumo7g00937 251 MobiDBLite consensus disorder prediction 222 251 - -
Pumo7g00937 251 Gene3D - 1 76 IPR012677 -
Pumo7g00937 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Pumo7g00937 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Pumo7g00937 251 Gene3D - 77 232 IPR012677 -
Pumo7g00937 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pumo7g00937 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 106 247 - -
Pumo7g00937 251 MobiDBLite consensus disorder prediction 169 191 - -
Pumo7g00937 251 MobiDBLite consensus disorder prediction 72 94 - -
Pumo7g00937 251 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Pumo7g00937 251 SMART rrm1_1 96 162 IPR000504 GO:0003723
Pumo7g00937 251 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pumo7g00937 251 FunFam serine/arginine-rich splicing factor RS41 isoform X2 87 218 - -
Pumo7g00937 251 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00937 Pumo-Chr7 17228930 17232979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00937 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.277 4.64e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00937 K12893 - gmx:100815452 416.001