Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00890 ATGGAATCAGCAGCAGCAACAGCAACAGCAACCTCTTCTCAGAGAAAGCTGAAGAGGAAGCGAGCTTCAACAAAAAGCGATCCTGAACTCGACCGTCTCAACTCGCTTCCGTGGAACTCCGCTCTTCCTCAAAACGACGATGACGACGACGCTTTCTCCATGTTCACTGGCTCCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCTGAGTATGGTTTGAATATTCCTGAACCTGAAGATGACAAGAGGAAGAAGAAGAAGAAGTCTAAGCAGAACGAAAATGTGAAGAAACAGCAGCAGGATGAAGTTGATGGTGCTTGTAGCGACGCGGTGGTCGAAGCAGAGTTGGATGAGACTGTGAAGTCTAAAGAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAACAAAAAGAAGGATGCTAGAGAAGACCAGAAAGTTGAGCAGTCAGATGCAGGTTTAGATACTAATATGAAGGATGATGTTGGGGAAGAGGACGTTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCGCTCCTAATGAAAGCAATATGCAAGCTTGGCTTCAAGGAACCAACACCTATTCAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGCCTTTTGGAGGAGAGAGAGAAGGCTGCAAACATGGTTGAAGAAAGGGGTGAAGAACATGAAAAGTATGCTCCTACAGGCCTTTTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGGGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTCGGGACTCCAGGAAGGTTGTGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCACTGTCTTTCTTTGTGCTTGATGAGGCTGATCGGATGGTACAAAGTGGTCATTTTAAGGAGTTGCAGTCAATAATTGACATGCTTCCCATGTCCAACATCTCTACTGAAGATAATTCTCAACATGTACAAAGTTGTGTTACAGTTTCTAGTTACCAAAAAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTTCGCAAGAAGCTGAAACGTGGCTCAATTCAACAAAAGCAATCATTGACAGATGGATTGAATTCTATTGAAACTCTTTCTGAGCGTGCGGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCGTCTATTTTAGCAGCTAAGCTTGAGGAGTCGTTTATTGAATGCAGAGAAGAAGATAAAGATGCATATTTGTATTATATTTTGACTGTCCATGGACAAGGCCGCACAATAGTTTTCTGTACGTCAATTGCAGCTTTACGCCATATTTCTTCCATACTGCGTATTCTTGGCATCAATGTTTGGACTCTTCATGCCCAAATGCAGCAGCGTGCACGTTTGAAGGCCTTTGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATCCCTGGTGTTAGAACTGTTGTCCACTATCAACTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGGAGAACAGCCAGAGCTTCTGCTGAAGGTTGTAGTATTGCTTTAATATCAACAAGAGATACGTCAAAGTTTGCTTCATTGTGCAAGTCATTTTCTAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTTCATGCCAGAGGTCCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACAAGGAAGGATTCCCAGGAAAAGGCTGAGAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGAATTAGTTACAGAAAATTATGACAGTGAAGAGGAACAAGTGAACAAACATAAGCAAATGAAGGCCAGCTCTAGACAATTGAGGAAATTGCAGGAGGAGCTCAATAGGCTGATTTCACGTCCATTACAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTGTTACACCCCTCATGCAGGAGCAATTGCAACAATTAGCAAGGCAAAAACTAAGTGATCACCAGGGTTCAGGACTAGGCAAAAAGGGAAAATTGGTAGTGATTGGTCAAGATTGCGTGGATGCACTTCAGGCACTTCGAAGTGCTGGTGAAGAGGTGCGAATGGATGTCAAGGATTTGGCAGGAAAACAGAGAAATGTGGAGAATTTAAAAAGAAAGCGAAAAGAGGAGAAAAAGCGTTTGCGTGATCAGCGTAGAAAGCAGAAGAGAAAGCTAAAACACGGGGATGAATAG 2445 0.4254 MESAAATATATSSQRKLKRKRASTKSDPELDRLNSLPWNSALPQNDDDDDAFSMFTGSNELEGGFLSLEEIDEAEYGLNIPEPEDDKRKKKKKSKQNENVKKQQQDEVDGACSDAVVEAELDETVKSKEKKKKKKKKKKKKNKKKDAREDQKVEQSDAGLDTNMKDDVGEEDVDETEFYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEREKAANMVEERGEEHEKYAPTGLLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISTEDNSQHVQSCVTVSSYQKKKRQTLVFSATVALSADFRKKLKRGSIQQKQSLTDGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAFDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISTRDTSKFASLCKSFSKDNFQRFPLENSFMPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVELVTENYDSEEEQVNKHKQMKASSRQLRKLQEELNRLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLARQKLSDHQGSGLGKKGKLVVIGQDCVDALQALRSAGEEVRMDVKDLAGKQRNVENLKRKRKEEKKRLRDQRRKQKRKLKHGDE 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00890 814 Gene3D - 463 706 IPR027417 -
Pumo7g00890 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 601 IPR027417 -
Pumo7g00890 814 CDD DEADc_DDX24 190 455 - -
Pumo7g00890 814 Pfam DEAD/DEAH box helicase 203 411 IPR011545 GO:0003676|GO:0005524
Pumo7g00890 814 Coils Coil 239 259 - -
Pumo7g00890 814 MobiDBLite consensus disorder prediction 781 814 - -
Pumo7g00890 814 MobiDBLite consensus disorder prediction 1 58 - -
Pumo7g00890 814 MobiDBLite consensus disorder prediction 146 166 - -
Pumo7g00890 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 374 IPR027417 -
Pumo7g00890 814 Coils Coil 118 150 - -
Pumo7g00890 814 Coils Coil 662 702 - -
Pumo7g00890 814 SMART ultradead3 198 428 IPR014001 -
Pumo7g00890 814 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 211 428 IPR014001 -
Pumo7g00890 814 MobiDBLite consensus disorder prediction 668 687 - -
Pumo7g00890 814 CDD SF2_C_DEAD 466 595 - -
Pumo7g00890 814 SMART helicmild6 505 586 IPR001650 -
Pumo7g00890 814 PANTHER RNA HELICASE 134 748 - -
Pumo7g00890 814 MobiDBLite consensus disorder prediction 80 108 - -
Pumo7g00890 814 MobiDBLite consensus disorder prediction 124 169 - -
Pumo7g00890 814 MobiDBLite consensus disorder prediction 129 145 - -
Pumo7g00890 814 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
Pumo7g00890 814 MobiDBLite consensus disorder prediction 76 110 - -
Pumo7g00890 814 Coils Coil 777 808 - -
Pumo7g00890 814 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 350 358 IPR000629 -
Pumo7g00890 814 Pfam Helicase conserved C-terminal domain 477 585 IPR001650 -
Pumo7g00890 814 MobiDBLite consensus disorder prediction 671 687 - -
Pumo7g00890 814 Gene3D - 126 425 IPR027417 -
Pumo7g00890 814 MobiDBLite consensus disorder prediction 792 806 - -
Pumo7g00890 814 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 465 626 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00890 Pumo-Chr7 15556856 15565247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00890 180 602 Eukaryotic Initiation Factors Gene Family AT5G11200 28.153 2.26e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00890 K14805 - gmx:100806018 1375.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00890 7 15556856 15565247 Pumo7g00890 7 15556856 15565247 ECH