Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00875 ATGTCATTCACAGGAACTCTTGATAAATGCACAGCATGTGACAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGAATTCCTTACCATAAAAACTGCTTCAAATGCAGTCACTGCAAGGGATGTCTTACGATGTGCACATACTCCTCAATGGATGGAATTCTTTATTGCAAGCCACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTGGTAAGACGAAGACCATCTTTTGGCCAATTTTTTTAACCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCTCTGGAAAAGGTGACACTTGAAGGGGAATGCTTCCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCACTCTCACACATTCAAGCTATGCTGCCCTTGATGGTGTCCTCTACTGCAGGGTCCACTTTCAACAACTTTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCCTCTACACCTCCACTACTAGAGGAACCATCACAAGAGCCAGAACCAGCATCTGAGGACCAAACAGAAGAAGAAACCTCTTGA 621 0.4444 MSFTGTLDKCTACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGCLTMCTYSSMDGILYCKPHFEQLFKESGNFSKNFGKTKTIFWPIFLTPSKLSSMFSGTLDKCSVCTKTVYPLEKVTLEGECFHKTCFRCAHAGCTLTHSSYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHKRTGSSTPPLLEEPSQEPEPASEDQTEEETS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00875 206 Pfam LIM domain 104 159 IPR001781 -
Pumo7g00875 206 Pfam LIM domain 10 65 IPR001781 -
Pumo7g00875 206 Gene3D Cysteine Rich Protein 100 168 - -
Pumo7g00875 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Pumo7g00875 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Pumo7g00875 206 PANTHER OS06G0237300 PROTEIN 6 79 - -
Pumo7g00875 206 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Pumo7g00875 206 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pumo7g00875 206 FunFam LIM domain and actin-binding 1 4 74 - -
Pumo7g00875 206 Gene3D Cysteine Rich Protein 5 72 - -
Pumo7g00875 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Pumo7g00875 206 MobiDBLite consensus disorder prediction 192 206 - -
Pumo7g00875 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Pumo7g00875 206 SMART lim_4 9 61 IPR001781 -
Pumo7g00875 206 SMART lim_4 103 155 IPR001781 -
Pumo7g00875 206 MobiDBLite consensus disorder prediction 175 206 - -
Pumo7g00875 206 FunFam LIM domain and actin-binding 1 98 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00875 Pumo-Chr7 15298968 15301336 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pumo7g00875 LIM 6e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00875 - K09377 gmx:100305845 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00875 7 15298968 15301336 Pumo7g00875 7 15298968 15301336 ECH
Pumo5g00311 5 6922922 6924744 Pumo7g00875 7 15298968 15301336 PCT