Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00870 ATGGGAAGGAAACCTTGTTGTGAGAAGATGGGGTTGAAGAAGGGTCCTTGGACTGCTGAGGAGGATGAGATTCTTGTGAATTATATCAACAAGAATGGTGGTCATGGAAGTTGGCGTTCTCTCCCCAAGTTAGCAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGACTAAGATGGACAAACTACCTCAGACCAGATATTAAACGTGGTTCCTTTACACTTGAGGAAGAAAAACTAATCATGCAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAACTTGTGGAACACCCACTTGAAGAAGCGTCTCATTTGCATGGGCCTGGACCCACAAACCCACCAGCCACTGGCCTCTTCAGGCAACCCAAATGACAAGGCCCATGCACCATCCACTTCAACCCGCCACATGGCCCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCAAGGGAACCACCACACTTCTTCAACAACAACAACAAAACTGACTCTGACTACTTCCTCCGCATTTGGAACTCTGAAGTTGGAGAATCTTTTCGTGATGTGCATAACAAATCAGAATCTTCAACCAAATGTGAGTCACTGTCTGCCACCCCTGTTGGATCCTCAAGTACCCCAGCAAGCATTGTGAAAGAGGAGTTTCTGTGGGGAGTTAGGAGGAAAATTGTCTCTGCAGATTCATCAAGCTCTAGTGAACTAGAAGATCAAGACTCTTGTGACACTTCATTGCAGCTCTTGTTAGACTTTCCTATGAACAATGACATGAGCTTCTTAGAATGA 828 0.465 MGRKPCCEKMGLKKGPWTAEEDEILVNYINKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGSFTLEEEKLIMQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLASSGNPNDKAHAPSTSTRHMAQWESARLEAEARLSREPPHFFNNNNKTDSDYFLRIWNSEVGESFRDVHNKSESSTKCESLSATPVGSSSTPASIVKEEFLWGVRRKIVSADSSSSSELEDQDSCDTSLQLLLDFPMNNDMSFLE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00870 275 FunFam Myb transcription factor 11 68 - -
Pumo7g00870 275 FunFam MYB transcription factor 70 117 - -
Pumo7g00870 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pumo7g00870 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pumo7g00870 275 CDD SANT 16 62 IPR001005 -
Pumo7g00870 275 Gene3D - 70 117 - -
Pumo7g00870 275 MobiDBLite consensus disorder prediction 125 149 - -
Pumo7g00870 275 Gene3D - 11 68 - -
Pumo7g00870 275 CDD SANT 70 113 IPR001005 -
Pumo7g00870 275 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pumo7g00870 275 SMART sant 13 64 IPR001005 -
Pumo7g00870 275 SMART sant 67 115 IPR001005 -
Pumo7g00870 275 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 242 - -
Pumo7g00870 275 MobiDBLite consensus disorder prediction 126 149 - -
Pumo7g00870 275 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Pumo7g00870 275 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pumo7g00870 275 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pumo7g00870 275 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00870 Pumo-Chr7 15243042 15246410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00870 1 275 MYB Transcription Factor Family AT3G61250 63.380 1.36e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo7g00870 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00870 K09422 - gmx:100798658 481.1