Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00869 ATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCGATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAGATTGATCAGGATAATAATGTTATTCAAGTTGTTATCCTGGTCCCAACCCGAGAGTTGGCTTTGCAAACTTCTCAAGTGTGCAAAGAGCTTGGAAAGCACTTGAATATTCAAGTTATGGTTACAACAGGTGGTACTAGCCTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCCAAGAAAGGCGTTTGTATTATGAAAGATTGCGCTATGCTTGTCATGGATGAGGCTGATAAGCTTCTGTCCCCTGAGTTCCAACCATCTATAGAGCAGCTGATTCATTTTCTTCCCATGAACCGTCAAATTCTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCAAAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTCCACTGTCTAAATACTCTATTTTCGAAGCTGCAAATAAACCAGTCTATCATCTTCTGCAATTCAGTGAATCGAGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGCTATTCATGTTTCTACATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCAGTTAATGTTGTTATTAATTTTGATTTTCCGAAGAACGCAGAGACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATTACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAGATTCCCCCGCAAATTGATCAGGCAATTTATTGCCGGTGA 1089 0.3893 MGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCIMKDCAMLVMDEADKLLSPEFQPSIEQLIHFLPMNRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00869 362 Gene3D - 193 362 IPR027417 -
Pumo7g00869 362 CDD DEADc_DDX6 1 190 - -
Pumo7g00869 362 Pfam Helicase conserved C-terminal domain 214 320 IPR001650 -
Pumo7g00869 362 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 199 359 IPR001650 -
Pumo7g00869 362 Gene3D - 1 192 IPR027417 -
Pumo7g00869 362 FunFam ATP-dependent RNA helicase DDX6 193 362 - -
Pumo7g00869 362 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 19 189 IPR014001 -
Pumo7g00869 362 Pfam DEAD/DEAH box helicase 13 177 IPR011545 GO:0003676|GO:0005524
Pumo7g00869 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 342 IPR027417 -
Pumo7g00869 362 CDD SF2_C_DEAD 200 329 - -
Pumo7g00869 362 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 361 - -
Pumo7g00869 362 SMART helicmild6 239 320 IPR001650 -
Pumo7g00869 362 SMART ultradead3 7 203 IPR014001 -
Pumo7g00869 362 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 135 143 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00869 Pumo-Chr7 15218132 15224360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00869 2 352 Eukaryotic Initiation Factors Gene Family AT3G19760 39.377 1.20e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00869 K12614 - gmx:100801402 719.539