Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00855 ATGGATCGAGGGGACCAAATGACATTACCTGGCTCTGCATCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAACTCAACCTGAACTGCACAATTCACCTAATATGCGACCATTGTCTAATCCGAATCTACCGTTTCAATCAAGCATTGGGGGTGGTGGTACCATTGGATCCACATTACCATTAGAGTCTTCAGGAATTTCAGCTCCATGTGTCAATGTGAGTGCTCCTTCTGGGGCTGTGCCTGGGGAAACTGTCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGGCCTGATGGAGCTGTGTCGTTGGCGTTGACTCCGACACCGGCTAGTCATCCTGGAGCCTTGGCACAAGGCCAGAAACGGGGTAGAGGGCGTCCGCCCGGGTCTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGGCCTAGAGCTATATGTATTTTGTCGGCCAATGGTGCTGTCTCTACTGTGACACTTCGTCAGCCTTCAACATCAGGTGGCACTGTGACATACGAGGGGCGTTTTGAGATAGTGTGCCTGTCAGGCTCTTACTTGGTTGCCGATAGTGGTGGCTCCCGCAATCGATCTGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGGGTGCTTATTGCCGCAAGTCCAGTTCAGGTGATACTTGGGAGCTTTACATGGGGCGGATCAAAGACGAAGATCAAGAAAAAAGAAGGTTCAGAAGGAGCAGAAGTTGCTATAGAGACTGATCATCAGCCAGTTCATAATCCAGTCGCAGTGAATAGCATTTCCCCAAATCAAAATCTTACTCCAACCTCATCTCTAAGTCCTTGGCCTGCATCGCGACCATTGGATATGCGCAATTCCCATATTGACATTGATTTAATGCGCGGGTGA 1023 0.4897 MDRGDQMTLPGSASYYMQRGIPGAGTQPELHNSPNMRPLSNPNLPFQSSIGGGGTIGSTLPLESSGISAPCVNVSAPSGAVPGETVKRKRGRPRKYGPDGAVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVADSGGSRNRSGGLSVSLASPDGRVIGGGVGGVLIAASPVQVILGSFTWGGSKTKIKKKEGSEGAEVAIETDHQPVHNPVAVNSISPNQNLTPTSSLSPWPASRPLDMRNSHIDIDLMRG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00855 340 Gene3D - 154 293 - -
Pumo7g00855 340 CDD DUF296 153 267 IPR005175 -
Pumo7g00855 340 MobiDBLite consensus disorder prediction 72 137 - -
Pumo7g00855 340 FunFam AT-hook motif nuclear-localized protein 1-like 154 285 - -
Pumo7g00855 340 MobiDBLite consensus disorder prediction 303 321 - -
Pumo7g00855 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 271 - -
Pumo7g00855 340 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Pumo7g00855 340 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Pumo7g00855 340 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Pumo7g00855 340 MobiDBLite consensus disorder prediction 28 57 - -
Pumo7g00855 340 MobiDBLite consensus disorder prediction 303 323 - -
Pumo7g00855 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Pumo7g00855 340 MobiDBLite consensus disorder prediction 1 57 - -
Pumo7g00855 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 59 315 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00855 Pumo-Chr7 15050955 15057375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00855 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.833 1.64e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00855 - - gmx:100799791 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00855 7 15050955 15057375 Pumo7g00855 7 15050955 15057375 ECH
Pumo5g00296 5 6661475 6668078 Pumo7g00855 7 15050955 15057375 PCT