Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00839 ATGGCCAACAACGGGAGTCCAAAGCATGAGAAGATGCAAAAGAACCTATGCACACAGCTAGCTGTTGCAGTGAGAAGTATTCAATGGAGCTATGGGATTTTCTGGGCACCTTCAACCACTGAAGAAAGGGTATTGGAATGGAGGGAAGGCTACTATAATGGAGACATTAAGACAAGAAAGACAGTCCAAACCATGGAATTGGAAATGAAGGCTGATAAAATAGGCCTGCAGAGGAGTGAGCAACTCAAAGAACTATACAAGTTTCTTCTTGCAGGTGAAGCTGATCCACAAACTAAAAGGCCTTCTGCTGCATTAGCTCCAGAGGACCTCTCAGATTTGGAGTGGTATTACTTGGTTTGCATGTCCTTTGTTTTCAATCACAACCAAAGTTTGCCTGGAAAAGCACAAGAAATTGGTGACACAGTCTGGTTATGCGATGCTCAACATGCGGATAGTAAAATTTTCTCTCGCTCTCTGCTAGCAAAGAGTGCGTCAATTCAGACCGTGGTGTGTTTTCCCTATCAGAAAGGCGTTATTGAGATAGGCACAACTGAACTGGTTGCTGAGGACCCTAGTCTCATTCAACATGTCAAGGCTTGCTTCTTAGAAATCTCAAAGCCTACATGCTCTGATAAATCTTCCTCTGTCCTTGATAAGCCACATGATGACAAATATCCAACATGCACCAAGGGTGACCACAGGATGTTAGATACAATGGCTTTGGAGAACCCATGTTCCCTTGAAGAAAAAATCAAATTTGATCAAGACCCCATCAATAATTTACAAGATGATAAGAATGAAGATTCTAACATGGATTCTCCTGATGGTTGTGAGCACCATTTCCCTATGGATGGATCCATGATTGAGGGTATCAATGGTGTGCCCTCTAAAGTTCATTTTGTGAATGATGCCTTAGTCATTGGTGCTCCAGATTCCCTGAGTTCTTGTGATTGTATGCCTGAAGCTTCTGAGAACCAAGATAAGGATTCCAAGAATGTAGGCCAAACTCAACTTGTGGAACTTCAAGATTGCTATAAACCAAAGAGAAGCTCCTTGGATGTTGGAGTTGATGAAGACTTGTGCTACGTAAGAACACTTTGTGCTATTTTGGGGAATTCATCAACTTTTAAACCAAACCCTTATGCTGGTAACTCAAATTGGAAATCTAGTTTTGCAAAATGGAAGAAAGGGAGAGTTTCTGAAAGGAAGAGGCCAAAGTTGCACCAGATCATGTTAAAGAAGACTTTGTTTAAGGTCCCCTTTATGCACAGAAGTTACTCTTCTCTCAAGTCACAAAAAGAGAATGAGAGAATGGAATGGACTAGTAAATTGGAAAATGCTGTTGATGGCTTCATGGGGAAAGCATTCTCTGATAAGAGAAGAGAAATTAAAAATTTTCAGGTTGTCAAATCTTTGGTTCCATCTTCTATAAGTGAGGTGGAGAAAATTTCAATTCTTGGGGACACAATTAAGTACTTGAAAAAGCTTGAGACAAGAGTGGAAGAGCTGGAATCTTACATGGAAGTTACAGATCCTGAAGCAAGAACCAGAAGAAAATGCCCTGATGTTCTAGAGCAGATGTCAGATAACTATGGCACCAGAAAGATTTGCATGGGAATGAAATCCTTGGATGAACAAGAGGAAGGCTTGTGGCATTGA 1659 0.4099 MANNGSPKHEKMQKNLCTQLAVAVRSIQWSYGIFWAPSTTEERVLEWREGYYNGDIKTRKTVQTMELEMKADKIGLQRSEQLKELYKFLLAGEADPQTKRPSAALAPEDLSDLEWYYLVCMSFVFNHNQSLPGKAQEIGDTVWLCDAQHADSKIFSRSLLAKSASIQTVVCFPYQKGVIEIGTTELVAEDPSLIQHVKACFLEISKPTCSDKSSSVLDKPHDDKYPTCTKGDHRMLDTMALENPCSLEEKIKFDQDPINNLQDDKNEDSNMDSPDGCEHHFPMDGSMIEGINGVPSKVHFVNDALVIGAPDSLSSCDCMPEASENQDKDSKNVGQTQLVELQDCYKPKRSSLDVGVDEDLCYVRTLCAILGNSSTFKPNPYAGNSNWKSSFAKWKKGRVSERKRPKLHQIMLKKTLFKVPFMHRSYSSLKSQKENERMEWTSKLENAVDGFMGKAFSDKRREIKNFQVVKSLVPSSISEVEKISILGDTIKYLKKLETRVEELESYMEVTDPEARTRRKCPDVLEQMSDNYGTRKICMGMKSLDEQEEGLWH 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00839 552 PANTHER TRANSCRIPTION FACTOR TT8 11 535 - -
Pumo7g00839 552 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 513 IPR036638 GO:0046983
Pumo7g00839 552 Gene3D - 459 526 IPR036638 GO:0046983
Pumo7g00839 552 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 18 201 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00839 Pumo-Chr7 14875210 14879889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00839 15 522 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G63650 39.057 2.29e-97 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00839 - - gmx:100783746 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00839 7 14875210 14879889 Pumo7g00839 7 14875210 14879889 ECH