Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00811 ATGCCTCAGCAAAGAACCGGTTTTACAAAGCAACAGCTACATGTTCTGAAAGCACAGATACTAGCATTTAGACGGCTGAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTTCTTCGGGCTATTGTTCCACCACCTCTTGAGATGCAGGCACAACAGCCAAATCATGCTGCAGGAGGACAAAACCAAGACAAATCTGCAGGAAATATTGTGGCAGAACAAGTAAGCCCAATTGAGTCCAATGCCAAGGAGTCACAGTCTATCCCTGGTATTAATGGTCAGAGTTCCTTAAAGCAGGAATCCTTTGCCAGAGATGAGAAATCCACTCCCCCAGTTCATGTTCAAGCTGTTGCGCCACCTGTGTCAAAGGAATCTGCTCCAACATTATCTGCTGGAAAGGAAGAGCAGAAATCAATTGGATGCTCTGTTAAGTCAAACCAGGATGGTGAACGTGTAAATAATACTACTGTTAGAAATGAGTTAGCATTAGATAGGGGAAAGGCTGTTGCACCACAGACTCCTGTATCCGACACAATGCAAATTAAGAAATCTACACAAACGAGCACTGTTTCCCAGCCAAAGGATGTGGGATCAACCAGAAAATATCATGGACCTCTATTTGATTTTCCTTTCTTTACTAGGAAACATGACTCCTTTGGGTCATCAATGATGCTAAACAACAACAATAACTTGTCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGCATGGAAGTACTTAACAAGAAAAGGACAGAAAATTTAAAGAAGATTGAAGGTTTATTGGCAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTGCTGAGGCTGCAAATCGAAGAGAAAAAGCTTCGCCTAGTAGATCTTCAGGCACGTTTAAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGCAAGTTTGTTAGGCTGTGTGAACGTCAGCGCATGGAACTTGCTAGACAAGTGCAGGCATCTCAGAGAGCAGTTAGGGAGAAACAACTTAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCCCACTGGGCCATTCGTGATGCCCGTACTGCCCGCAACAGGGGAGTTGCCAAATATCATGAGAAGATGTTGCGGGAGTTCTCAAAACGTAAAGATGATGACAGAAACAAAAGGCTGGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATACCTGGTGATGCTGCAGAGCGATATGCCGTTCTTTCAACTTTCTTAACCCAGACTGAAGAGTATCTACACAAATTAGGAAGTAAGATAACAGCTACCAAAAATCAACAGGAAGTGGAGGAAGCAGCAAAAGCTGCTGCAGCTGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCTGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGAAATCGTTTTCTGGAGATGAATGCTCCTAGAGTCAGTTCATCTGTCAACAAGTATTACAACCTTGCCCATGCTGTGAATGAAACAGTCATAAGGCAACCATCAATGTTACGAGCTGGAACATTAAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATTTTGGCGGATGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCTTACTTGATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTTTGGTTAACTGGAAGAGTGAGTTTTATAATTGGTTGCCATCTGTTTCATGCATTTTTTATGTTGGAAGCAAGGATCATCGGTCAAAATTATTTTCCCAAGAGGTTTCTGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGATCGGTCAAAACTTTCAAAACTTGACTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGAGATTCAGTTTTAGCACGTGATCTTGATAGATATCGTTGTCAAAGACGTCTGCTTTTGACAGGAACACCATTACAGAATGATTTGAAGGAACTCTGGTCTCTCTTAAATTTACTTCTTCCTGAAGTTTTCGATAATAAAAAAGCCTTTAATGATTGGTTCTCAAAACCATTTCAAAAGGAATTTCCCACTCAAAATGTAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTTATTATTATCCATCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTCGAAGGCTCACTTCCACCAAAGGTCTCCATAGTTCTAAAATGTAAAATGTCAGCTGTCCAGAGTGCCATTTATGACTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAACGCAAGCTTCATAGGAATCCAGCATACCAGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTGCGCAAGACTTGCAATCATCCATTGCTTAATTACCCATTCTTCAGTGACCTATCTAAGGATTTCATTGTAAGATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACTGGACATCGAGTTCTACTTTTCAGTACCATGACAAAACTTCTAGATATCTTGGAAGAATATCTACAGTGGCGAAGACTTGTTTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCAATAGTGGACTTCAATAGCCCTGATTCAGATTGTTTCATCTTCCTGCTCAGTATTCGAGCTGCTGGACGAGGCCTTAACCTTCAGTCTGCTGACACGGTTGTCATTTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCACCGTATTGGACAGACAAGAGAAGTCAAAGTTATATACATGGAAGCTGTTGTTGACAAAATCTCTAGTCATCAGAAGGAGGATGAACTGAGAAGTGGAGGCACTGTTGATATGGAGGATGAACTTGCAGGTAAGGATCGCTACATGGGGTCCATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGAAATGGCTGATGAGGTTATTAATGCTGGACGGTTTGATCAAAGAACAACACATGAAGAGAGGCGTTTGACTTTGGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTGTCCATGATGTTCCCTCACTACAGGAGGTAAATCGCATGATTGCCAGGAGTAAAGAGGAAATCGAACTGTTTGATCAAATGGATGATGAACTTGATTGGATTGAGGAGATGACACGATATGATCACGTGCCTAAGTGGCTTCGAGCCAATACAAGAGAGGTAAATGCTGCTGTTGCTGCTCTATCAAAAAGACCATCAAAGAACACTTTATTGGGTGGTAGTATTGGCATGGAATCAAGTGAATTTGGTTCTGAAAGAAAAAGGGGACGACCCAAGGGAAAAAAGCATCCTAATTATAAAGAGTTGGATGATGAAATTTTGGAGTACTCTGAAGTAAGCTCTGATGAAAGAAATGAATATGCACATGAAGAAGGAGAAATAGGAGAATTTGATGATGATGGGTATAGCGTGGCTGATGGAGCTCAGACCATTGATAAAGATCAATTGGAAGATGGTCTGCTTTGTGATGCTGGATATGAATTTCCTCAATCTTTAGAAAGTGCTAGAAATAATCAGATGGTTGAAGAAGCTGCTGGTTCCTCAGGATCGTCCTCAGACAGTCAAAGATTGAGACAGATAGTATCGCCATCAGTCTCCTCTCAGAAATTTTGTTCCCTCTCTGCATTAGATGCTCGGCCAAGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCGGTATCTGGTGATTCTCAAATGGACCATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTTTGCAGAAACCAAAGATTAAACGTAAACGCAGTCTTCGTGTTCGACCCCGTCATGCCACTGAAAGACCTGAAGAAAAATCTGGTAGTGAAATGGCATCTCATTTGGCAGTCCAAGCAGATCACAAATATCAAGCGCAACTGAGGACTGACCCTGAATCCAAATTATTTGGTGACTCCAATGCCAGCAGGCATGAACAAAACACACCATCGTTAAAAAATAAGCGAACCTTACCTTCAAGGAGAGTAGCTAATACATCCAAATTACATGGATCTCCAAAGTCAAGTCGTTTGAATTGCATGTCCGTGCCTTCACAAGATGGTGGTGAACACTCCAGAGAAAGCTGGGAAGGGAAACCTATCAATTCAAGTGGATCTTCAGCACATGGCACTAAGATGACTGAAATTATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGCCATGAGATTGTACCTTTATTAACGGATTTGTGGAAGAGGATTGAAAATTCTGGATCTGGAAACAGCCTGTTAGATCTGCGAAAGATTGATCAGCGGATTGATAAATTGGAGTATAATGGAGCAACGGAGCTTGTATTTGATGTGCAGCTAATGTTGAAGAGTGCAATGCATTTTTATGGTTTTTCGTATGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATCTTGAAAATTGCATTTCCCGATACGGACTTCCGAGATGCAAGAGGTGCACTTTCTTTCTCCAGTCAAGCTGCTGCCGGTACAGTAACATCCCCAAGGCAAGCGGCTGTCAGTCAAAGCAAGAGGCACAGGCTGATAAACGAGATGGAAACCGAGTCATACCCTTCGCAGAGGTCGCTGCAACGAGGATCGGCTTCTAGCGGTGAAAACAACAGAATTAAAGTCCATTTGCCACAGAGGGAATCAAGAACTGGAAGTGGTGGGGGCAGCAGCACCAGGGAGCAACAGCAGGATGATTCTTCGCTGCTCGCGCATCCGGGTGAACTGGTTGTATGCAAGAAGAGAAGAAATGACAGGGAGAAATCTTTGGTGAAAACTAAAACTGGTCCTGTTTCACCATCTAGCATGAGAACTACAGGGCCAGGTGCAGTCCCTAAGGATGCTAGATTAACTCAACAGGGTTCCCATGCACAAGGGTGGGCTGGCCAGCCATCTCAACAACCAAATGGACCTGGTGGATCAGTTGGCTGGGCAAATCCTGTAAAGAGGCTAAGAACAGATTCTGGGAAGAGAAGACCAAGCCATGCATAG 5277 0.422 MPQQRTGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPPLEMQAQQPNHAAGGQNQDKSAGNIVAEQVSPIESNAKESQSIPGINGQSSLKQESFARDEKSTPPVHVQAVAPPVSKESAPTLSAGKEEQKSIGCSVKSNQDGERVNNTTVRNELALDRGKAVAPQTPVSDTMQIKKSTQTSTVSQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMLNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRAVREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDDRNKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEEYLHKLGSKITATKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRVSSSVNKYYNLAHAVNETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDHRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKLDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEFPTQNVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKRKLHRNPAYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFIVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDELRSGGTVDMEDELAGKDRYMGSIESLIRNNIQQYKIEMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDELDWIEEMTRYDHVPKWLRANTREVNAAVAALSKRPSKNTLLGGSIGMESSEFGSERKRGRPKGKKHPNYKELDDEILEYSEVSSDERNEYAHEEGEIGEFDDDGYSVADGAQTIDKDQLEDGLLCDAGYEFPQSLESARNNQMVEEAAGSSGSSSDSQRLRQIVSPSVSSQKFCSLSALDARPSSISKRMTDELEEGEIAVSGDSQMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERPEEKSGSEMASHLAVQADHKYQAQLRTDPESKLFGDSNASRHEQNTPSLKNKRTLPSRRVANTSKLHGSPKSSRLNCMSVPSQDGGEHSRESWEGKPINSSGSSAHGTKMTEIIQRRCKNVISKLQRRIDKEGHEIVPLLTDLWKRIENSGSGNSLLDLRKIDQRIDKLEYNGATELVFDVQLMLKSAMHFYGFSYEVRTEARKVHDLFFDILKIAFPDTDFRDARGALSFSSQAAAGTVTSPRQAAVSQSKRHRLINEMETESYPSQRSLQRGSASSGENNRIKVHLPQRESRTGSGGGSSTREQQQDDSSLLAHPGELVVCKKRRNDREKSLVKTKTGPVSPSSMRTTGPGAVPKDARLTQQGSHAQGWAGQPSQQPNGPGGSVGWANPVKRLRTDSGKRRPSHA 1758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1247 1266 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1382 1437 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1612 1635 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 172 195 - -
Pumo7g00811 1758 SMART QLQ_2 6 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo7g00811 1758 Gene3D - 523 771 IPR038718 -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1610 1758 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1713 1735 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1168 1196 - -
Pumo7g00811 1758 Gene3D - 334 407 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1671 1687 - -
Pumo7g00811 1758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 762 IPR027417 -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 80 148 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1381 1459 - -
Pumo7g00811 1758 FunFam Brahma1 1460 1579 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1141 1210 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 80 98 - -
Pumo7g00811 1758 Coils Coil 1079 1099 - -
Pumo7g00811 1758 FunFam ATP-dependent helicase BRM 333 407 - -
Pumo7g00811 1758 SMART bromo_6 1458 1569 IPR001487 GO:0005515
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1645 1664 - -
Pumo7g00811 1758 SMART ultradead3 528 717 IPR014001 -
Pumo7g00811 1758 FunFam ATP-dependent helicase BRM 523 771 - -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1315 1334 - -
Pumo7g00811 1758 SUPERFAMILY Bromodomain 1509 1570 IPR036427 GO:0005515
Pumo7g00811 1758 ProSiteProfiles QLQ domain profile. 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo7g00811 1758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 863 1040 IPR001650 -
Pumo7g00811 1758 PANTHER SNF2/RAD54 HELICASE FAMILY 278 1221 - -
Pumo7g00811 1758 SMART helicmild6 889 973 IPR001650 -
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 1300 1362 - -
Pumo7g00811 1758 FunFam ATP-dependent helicase BRM 772 982 - -
Pumo7g00811 1758 Pfam SNF2-related domain 535 839 IPR000330 GO:0005524|GO:0140658
Pumo7g00811 1758 MobiDBLite consensus disorder prediction 166 196 - -
Pumo7g00811 1758 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo7g00811 1758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1104 IPR027417 -
Pumo7g00811 1758 Coils Coil 282 306 - -
Pumo7g00811 1758 Pfam Helicase conserved C-terminal domain 862 973 IPR001650 -
Pumo7g00811 1758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 544 709 IPR014001 -
Pumo7g00811 1758 Gene3D - 1459 1613 IPR036427 GO:0005515
Pumo7g00811 1758 Gene3D - 772 982 IPR027417 -
Pumo7g00811 1758 CDD SF2_C_SNF 858 983 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00811 Pumo-Chr7 14262449 14271049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00811 553 998 RAD5 or RAD16-like Gene Family AT1G02670 26.499 3.91e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo7g00811 SNF2_N 5.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00811 - - gmx:100807104 3251.84