Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00809 ATGGCAGGGCGGTCGCTGTTGGACGACGGGGTTCGCGTAGAAGATAGGGGCAGCTTTGTTGTTGGATGCTCAAACGACGGTTCTCGGTGCCGTTTCGAGAAGTTGCTCTCTGAGTTCTCGATTGAGATCTGTGGGTTTTATTTTGTTGAGCCTTTTCCTCCAATGTTGGGTGATGGGCAACCTGTGGATTTATATAAGCTGTTTTTGGTGGTGAGAGGGAAGGGTGGCTACGACGCCGTTTGTAATGGGAAGTTGTGGGACACTGTTGGGGAGGAGTCTGGTTTGGGAGTGAGCATTGGTTCTTCTGTGAAGTTGGTGTATAGTAAGTATTTGAGTGTTTTGGATGCGTGGTTGAAGAAGGTTGCGGAGAGTAAAGTGTCCCCTGAGTGTGGTGTTGTGGATGATAGGGATCAGTTTGGGAGGCGGTTGATGGAGTTGCAGGCTGAGGATGGCGTGGCTCGAGAGGAGGCCGAGGGTGGAGTTGGTGATGATAATGTGGATGGGAGGAAGTTGTGTGGTGATAATGTGGTGAAGGGTAATGGAGATGATGGAGATGGAAATGGAGGGTGTCCTGATTTGGAGATGCCGGACTGTGTGATGAATGAGTCCGTGAATGCAAATGTGGGTGAGGGAAATGAGGGTGATGGAGATGAAAGAGATAGAAATGGAGGGTGTCCTGATTCGGAGATTCCGGACTGTGAGGTGAATGAGTCGGTGAATGGAAATTCGGGTGAGGGAAATGATGCAATGGAAGTGGGGTTAGAGTTTGGTGGAGGGAAAATGTCTGAAGAGCAGGCGGTGGATGTGTCAGATGGGGCGAACTACAGTGTGGCTGGATTGTTGAGTGGAGGCAAGAAGTGCGGTGACAATGATGATAAGGGCTTGATGCTGGATCCATCTGGTGGTGATAGTGATGGTCAAAAGAGGAAGAGAGACATGTTGAATTCATCTGCTGGTGATAGTGATGGTCAAAAGAGGAAGAGAGACATGTTGAATTCATCTGCTGGTGATAGTGATAGTGACGGTTCTGATCATAAGAGGATGAGAGAGTCTGCATTGGATATGTTGAGCTGGGTTGCAGATGCAGCAAAGAATCCCTGTGATCCTGAAGCTGGTTCAATACCTGAAAAGCCAAAGTGGAAGTCTTACAGCAATCAGGAGGTGTGGAAACAGGTGCTGTTGTTTCGAGAGGCAGCGTTTCTCAAAAGAGGTTCTGATCCAAGCAGTGAACAGCGTAATTGGCAGAATCAGAAGATGCACCCTTGCTTGTATGAAGATCACCTTGGGACAAACTACAATCTTAGAGAGAGGTTGAAACGTGACAAGAAGATTTTATTTGGCAAATCTACATCATCTGCACGAAGCTCTTCTGATTCATCTGTAGGAACTGATAACAGAACACCAAGTCCTCATCCTGAAGATCGTTCTGAGAAACGGTTGCTTGATTCCTCTGATGCAAATTCAGGTCTTGACCGATGTGCCACAGTATGCATTCCTTTGGGGGCAAATCATCAAGCTGAATTACCAGAATGGACCGGCATGCCTTCTGAAGATTATTCTAAGTTTTCAGGGACCCAAATATGGCCTTCGGCAACAGTAAATACCAGACTTCTTATTGAAAGGGACCCCATAGGAAAGGGAAGACAAGATTCATGCGGCTGTGCCGTACCAGGTTCTGTTGAATGTGTAAGATTCCACATTACTGAGAAAAGGGCTAAAGTTCATCTGGAATTGGGTGCAGCGTTTTTCGACTGGAATTTTGATCAGGTAGGTGAAGACGTTAGGCTATTGTGGGCAAAAGAAGAAGAGAAAAAATTCGAGGATGTGATACGATCAAACCCTCCATCACCTGAGACATATTTCTGGGACCATATATTTAGGGCATTTCCTACGAAGAGCAGGGCAGATTTAGTGAGCTACTACTTCAATGTCTTTATTTTGGAGCGCAGAGGATACCAAAATAGGCATACTCCTGATAACATTAACAGTGATGACGATGATGATGAAGTTGGACCACTGAGGAATGTTTTTGGACATCAGACACAGAATTCTAGACATCAGACGCAGAATCCGCGCGGCTCCATCTTATTGACCCCCAAAAAGACACAGACAAAGAGAAATTAG 2124 0.4633 MAGRSLLDDGVRVEDRGSFVVGCSNDGSRCRFEKLLSEFSIEICGFYFVEPFPPMLGDGQPVDLYKLFLVVRGKGGYDAVCNGKLWDTVGEESGLGVSIGSSVKLVYSKYLSVLDAWLKKVAESKVSPECGVVDDRDQFGRRLMELQAEDGVAREEAEGGVGDDNVDGRKLCGDNVVKGNGDDGDGNGGCPDLEMPDCVMNESVNANVGEGNEGDGDERDRNGGCPDSEIPDCEVNESVNGNSGEGNDAMEVGLEFGGGKMSEEQAVDVSDGANYSVAGLLSGGKKCGDNDDKGLMLDPSGGDSDGQKRKRDMLNSSAGDSDGQKRKRDMLNSSAGDSDSDGSDHKRMRESALDMLSWVADAAKNPCDPEAGSIPEKPKWKSYSNQEVWKQVLLFREAAFLKRGSDPSSEQRNWQNQKMHPCLYEDHLGTNYNLRERLKRDKKILFGKSTSSARSSSDSSVGTDNRTPSPHPEDRSEKRLLDSSDANSGLDRCATVCIPLGANHQAELPEWTGMPSEDYSKFSGTQIWPSATVNTRLLIERDPIGKGRQDSCGCAVPGSVECVRFHITEKRAKVHLELGAAFFDWNFDQVGEDVRLLWAKEEEKKFEDVIRSNPPSPETYFWDHIFRAFPTKSRADLVSYYFNVFILERRGYQNRHTPDNINSDDDDDEVGPLRNVFGHQTQNSRHQTQNPRGSILLTPKKTQTKRN 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00809 707 SMART bright_3 27 120 IPR001606 GO:0003677
Pumo7g00809 707 MobiDBLite consensus disorder prediction 212 227 - -
Pumo7g00809 707 MobiDBLite consensus disorder prediction 655 673 - -
Pumo7g00809 707 SUPERFAMILY ARID-like 52 122 IPR036431 GO:0003677
Pumo7g00809 707 MobiDBLite consensus disorder prediction 468 485 - -
Pumo7g00809 707 CDD SANT 598 645 IPR001005 -
Pumo7g00809 707 SMART ARID_2 23 115 - -
Pumo7g00809 707 MobiDBLite consensus disorder prediction 286 347 - -
Pumo7g00809 707 MobiDBLite consensus disorder prediction 676 701 - -
Pumo7g00809 707 Pfam ARID/BRIGHT DNA binding domain 51 112 IPR001606 GO:0003677
Pumo7g00809 707 ProSiteProfiles ARID domain profile. 26 119 IPR001606 GO:0003677
Pumo7g00809 707 MobiDBLite consensus disorder prediction 448 467 - -
Pumo7g00809 707 MobiDBLite consensus disorder prediction 176 254 - -
Pumo7g00809 707 CDD ARID 31 111 - -
Pumo7g00809 707 MobiDBLite consensus disorder prediction 445 486 - -
Pumo7g00809 707 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 26 702 - -
Pumo7g00809 707 Gene3D - 23 128 IPR036431 GO:0003677
Pumo7g00809 707 MobiDBLite consensus disorder prediction 655 707 - -
Pumo7g00809 707 MobiDBLite consensus disorder prediction 282 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00809 Pumo-Chr7 14241885 14245486 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo7g00809 ARID 8.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00809 - - gmx:100779445 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00251 5 5949986 5955494 Pumo7g00809 7 14241885 14245486 PCT