Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00772 ATGGTGTCGGTGAACCCAAACCCCGCTCAAGGCTTTTACTTCTTCGATCCTTCCAACATGGCCCTTCCCGGAGTCAATAATCTTCCGCCGCCGACGCCGACTCCGGCTGCTCCCGCTGCCGCGCCCGCCGTGGTGGAGGATCCGAGTAAGAAGATCCGGAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTTCTCGCCCATACCCTCAAAAAGCTCCTAAAACTCCGACTGTATCCCAAGTTATGGGCCCACTGCAATCTTCATCTGCTTTCATTGAACCTGCATACATTTATAGCCCGGATTCTTCATCTGTGCTTGGAACTCCAGTTACTAACATGCCTTTGTCATCTTGGAATTATAATACTACACCACAACCAGTCAATGTGCCACAAGTGACCAGAGATGACATGGGATTGACTGGAGCTGGACAAGCTGTTCCTAATTGTTGCTACAGCAGTAGTAATGAGAGCACCCCTCCGACTTGCCCAAGTAGCAAAAGGATTAATCAAGGTGATCAGGGCAAGCCAATTAAAGTAATGCCAGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTTGATCCAAATTCAACCAATCACCTACAGAAACTAAGACAGATGGACCCTATAAATGTGGAAACGGTATTGTTGTTGATGAGAAATCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATGTAAGTTTGTTTCCGATAGTTGGCATTTTTTCTCTCGTTATTTTTCCAACAGACATATTTATTGTGCACATTAATTTAGTTAGATGCCAAAGTCATCTTCTAATCCTTGTTGCTTACTTGCTTTTATTATGTAACATGACAAAAGATATGAGATGA 1053 0.4359 MVSVNPNPAQGFYFFDPSNMALPGVNNLPPPTPTPAAPAAAPAVVEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKASRPYPQKAPKTPTVSQVMGPLQSSSAFIEPAYIYSPDSSSVLGTPVTNMPLSSWNYNTTPQPVNVPQVTRDDMGLTGAGQAVPNCCYSSSNESTPPTCPSSKRINQGDQGKPIKVMPDFAQVYSFIGSVFDPNSTNHLQKLRQMDPINVETVLLLMRNLSINLMSPEFEDHVSLFPIVGIFSLVIFPTDIFIVHINLVRCQSHLLILVAYLLLLCNMTKDMR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00772 350 SMART sant 61 109 IPR001005 -
Pumo7g00772 350 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Pumo7g00772 350 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Pumo7g00772 350 CDD SANT 64 107 IPR001005 -
Pumo7g00772 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Pumo7g00772 350 NCBIfam myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Pumo7g00772 350 FunFam protein REVEILLE 6 isoform X1 64 112 - -
Pumo7g00772 350 MobiDBLite consensus disorder prediction 215 235 - -
Pumo7g00772 350 PANTHER SWI/SNF COMPLEX-RELATED 41 292 - -
Pumo7g00772 350 Gene3D - 65 112 - -
Pumo7g00772 350 ProSiteProfiles SANT domain profile. 60 113 IPR017884 -
Pumo7g00772 350 MobiDBLite consensus disorder prediction 215 236 - -
Pumo7g00772 350 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Pumo7g00772 350 MobiDBLite consensus disorder prediction 110 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00772 Pumo-Chr7 13580977 13586931 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo7g00772 Myb_DNA-binding 3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00772 - - gmx:778090 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00772 7 13580977 13586931 Pumo7g00772 7 13580977 13586931 ECH
Pumo7g00772 7 13580977 13586931 Pumo5g00226 5 5503438 5506075 ECH
Pumo5g00226 5 5503438 5506075 Pumo7g00772 7 13580977 13586931 PCT