Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00768 ATGGCGGACGCCGGCGACTTTGCCGGCACCATTTGTTCGATCTGCTACGAACCCCTCAACCCCATTAGCGAGGACCTTCAATCTGTCTCCATCTGCGGCCACGTTTTTCACGAGCTTTGTCTGCAGCAATGGTTCGAGTACTCTTCGAAAGGGAAGAAGCACACGTGCCCCATTTGCAAGCAGAGTTGCAGGGCCAGCGACGCGTGCAGGCTCTATTTTCAGTCAGTGGGAGATGCGACCGATAGTGTGAAGCCTCAGAAGAGCTTTGAGCTTGAGGAAGATTCTGGGGTTCTGCGTAGGGAAGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTAATTCTGAGTTGGAACGGCAAACAAAGGAATTAGAAGGACTTAATGAGGAGCTCTGTACTTGCAAGGAGCAAGCAAAGATAGAAACAGCATTAAAGAATGAGGCTTTAAATCAAAAGGCATCCATACAATTCCAGCTTAATATGAAATCACAGGAGCTTGAGAAGTCAACTTTGGAGTGTTTTAGATTAAAAGAAAGGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTATCTGATCTGGACATTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTAAAGACACAATAGATACATTGAAAAGATCTCTGGTCATGCGGAACAGGAGTTACAAAGAATTGATGGCCAAGTGCAATATTCTTGGAAGAGGTGAGGCTCGTTATAGCAAAAAGGTTGAGAAGGCTAAAGAGAAGATCACTAAACTGAAGGAGAGGGTACAAGAACTGGAGACATTAGCTGAAGCAAAAGAGAACAAATATCTGATGTCTCTCAAACATTCAAAAACAACAAAGAGTTCAAAGAATGTCGAAGAAAACATCAAATCTGATTCTGATGCATTGACAGCTTGCAAATTTTCATTAAAAGAGCAAAGCAAACAAATTTCAACACCCAAATCTGGAATAGACCTGACTGCAAATGACAACAGTAAATCTTTTCAATCTTTGAAGATAGAGAACTCCAATGTTAGTAAAAATAAAACTGTGAATGTTAGTAATGGAAGTAAAACTACCTTTTCTCTTGATAAAAAGAGAGATTATATCTCAATCGATGAAGATGATTCAGAAGGCACTAATGCTTTGCAAGGATTTTCAAAACACAACTACAAAGATCAAGACACGGATGATATTGCTTTTACGAAGCCTTCTCCAGTGAAGCTAGAGGCCGTGTCTGGCATAAAGACTGATACATCGTTGCCAGGAAAATGTACTTTGGCTGAGTCTCCCAGAGTTGATATTGACATTGACATTGACATGGCTAACATTTCAGCCGGTGCTATGGATGAAGATGTAACTTTACAAGCCAACATTAAACAACCCATGGTGAACATTAGAAAGGAGTCACCATTAACACTTTCAAATTCAGCTCCAGGGAACATCTGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCACCGATACTTGGGTAAATGGTGCAAGCGTGGTGAATCATCATCTGCAAAACGATCAAGTAATGGGGATTTAATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGGACTCCTAGCCAAATCCTCTCGGGTGGTAAGGAAAATTCAGTAAGTTCAAAAAGGTCAAAGTTAGGAGTTAAAACAAGTAGTTTGCAATCGCAGGGGTGCCTGCAGATAGAACACTTTTTTGGGAGAGTCACTCAGTAA 1755 0.4165 MADAGDFAGTICSICYEPLNPISEDLQSVSICGHVFHELCLQQWFEYSSKGKKHTCPICKQSCRASDACRLYFQSVGDATDSVKPQKSFELEEDSGVLRREVKRLEVKVSGLNSELERQTKELEGLNEELCTCKEQAKIETALKNEALNQKASIQFQLNMKSQELEKSTLECFRLKERNMALAKELAALKLVSDLDIDEEEVLKLATLGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNILGRGEARYSKKVEKAKEKITKLKERVQELETLAEAKENKYLMSLKHSKTTKSSKNVEENIKSDSDALTACKFSLKEQSKQISTPKSGIDLTANDNSKSFQSLKIENSNVSKNKTVNVSNGSKTTFSLDKKRDYISIDEDDSEGTNALQGFSKHNYKDQDTDDIAFTKPSPVKLEAVSGIKTDTSLPGKCTLAESPRVDIDIDIDMANISAGAMDEDVTLQANIKQPMVNIRKESPLTLSNSAPGNICFSGGLLGPDGTHRYLGKWCKRGESSSAKRSSNGDLIAVGADGRGGRIKVLRTPSQILSGGKENSVSSKRSKLGVKTSSLQSQGCLQIEHFFGRVTQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00768 584 SUPERFAMILY RING/U-box 11 64 - -
Pumo7g00768 584 Pfam Ring finger domain 11 60 IPR001841 -
Pumo7g00768 584 SMART ringv_2 11 60 IPR011016 GO:0008270
Pumo7g00768 584 Coils Coil 102 129 - -
Pumo7g00768 584 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Pumo7g00768 584 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 582 - -
Pumo7g00768 584 SMART ring_2 12 59 IPR001841 -
Pumo7g00768 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 67 IPR013083 -
Pumo7g00768 584 Coils Coil 246 280 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00768 366 584 C3H Transcription Factor Family AT4G01270 34.454 5.28e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00768 K11985 - gmx:100812811 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00768 7 13486742 13491721 Pumo7g00768 7 13486742 13491721 ECH