Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00707 ATGGTGTATGTCAAGGCTCAGAAGTCAAAAGCTTACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGAGAGGGAAAAACTGATTACCGTGCCAGGATTCGGTTGATTAACCAGGACAAGAACAAATACAACACTCCGAAATATCGCTTTGTGGTTCGCTTTACCAACAAGGATATTATTGCACAGGTAATATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCAGCTTATGCACACGAGCTGCCGCAATATGGTCTTGAAGTAGGGCTTACAAATTATGCTGCAGCTTATTGTACTGGGCTACTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAAGAGTACGAAGGAAATGTTGAGGCTACTGGAGAGGATTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTACTTGATGTTGGTCTTATTAGGACTACAACCGGCAACCGTGTCTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGTGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGATGTTCATCGCAAATATGTCTTTGGTGGACATGTTGCTGCCTATATGAAGATCTTGGCGGAAGATGAACCTGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGAATTGAAGCTGATGGTATTGAGGCTTTGTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTCAAGAAATCTGAGAAGCAGCCCCCGAAGGAGCACAAGAGGTACAACTTGAAGAAACTTACTTATGAGGAGAGGAAGGCTAAGTTGGTTGCACGCGTGGGGGCTATCAACTCTGCTGCTGACAACGATGAAGATGACGATTAA 897 0.4515 MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQVISASIAGDIVLAAAYAHELPQYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDADVHRKYVFGGHVAAYMKILAEDEPEKYQSHFSEYIKRGIEADGIEALYKKVHAAIRADPTLKKSEKQPPKEHKRYNLKKLTYEERKAKLVARVGAINSAADNDEDDD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00707 298 CDD Ribosomal_L18_L5e 41 170 - -
Pumo7g00707 298 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo7g00707 298 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 290 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo7g00707 298 SUPERFAMILY Translational machinery components 11 252 - -
Pumo7g00707 298 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo7g00707 298 MobiDBLite consensus disorder prediction 250 269 - -
Pumo7g00707 298 FunFam 60S ribosomal protein L5 1 291 - -
Pumo7g00707 298 Pfam Ribosomal L18 C-terminal region 235 287 IPR025607 -
Pumo7g00707 298 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo7g00707 298 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo7g00707 298 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo7g00707 298 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo7g00707 298 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo7g00707 298 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo7g00707 298 Gene3D - 1 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00707 Pumo-Chr7 11668065 11670668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00707 1 291 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.474 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00707 K02932 - gmx:100805868 574.704