Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00666 ATGACAGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGAAAAACAGTAGCCTTTTTGCTTCCAACAATTGAAGTTGTGGCAAAGTCACCTCCAAGTGATCGTGATCATAGGCGGCCACCAATTGCTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAGGCCACTAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTTATTGGAGGGACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGACCATGTTGAGAATACTGCTGGTTTTGCAAGTAGGCTGATGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGGTGCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGAACCGAGGAGACACATTCACAGGTCTGCCAGAGACATTTAGTTGCCCCATTGGACAAGCATTTCTCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTTAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTCTGCCAGCAGATAGAGAACAGTATATACATCGACTCGGTAGAACAGGGCGAAAAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGACTTCTTTTTATCTACCGTAAAGGATTTGCCTATTGAGAAAGCTCCTGTGGTACCTTCAGTTGATCCTGATACTAAGAAAAAGGTGGAAAAGGCTCTATCCCATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTATTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTGGAACTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAGCTAGTCCTTGGCAAGATGGGCCTTAGGAATATTCCTGGTTTACGTGCCAAATAG 1344 0.442 MTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPTIEVVAKSPPSDRDHRRPPIAVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFASRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVCQRHLVAPLDKHFSLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGKEGQGILLLAPWEDFFLSTVKDLPIEKAPVVPSVDPDTKKKVEKALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00666 447 CDD SF2_C_DEAD 209 340 - -
Pumo7g00666 447 Gene3D - 201 425 IPR027417 -
Pumo7g00666 447 SMART helicmild6 250 331 IPR001650 -
Pumo7g00666 447 Gene3D - 1 193 IPR027417 -
Pumo7g00666 447 Pfam DEAD/DEAH box helicase 3 180 IPR011545 GO:0003676|GO:0005524
Pumo7g00666 447 Pfam Helicase conserved C-terminal domain 226 331 IPR001650 -
Pumo7g00666 447 CDD DEADc_MSS116 1 194 - -
Pumo7g00666 447 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 226 374 IPR001650 -
Pumo7g00666 447 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 9 192 IPR014001 -
Pumo7g00666 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 346 IPR027417 -
Pumo7g00666 447 PANTHER RNA HELICASE 1 377 - -
Pumo7g00666 447 SMART ultradead3 1 207 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00666 Pumo-Chr7 11049839 11062219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00666 3 362 Eukaryotic Initiation Factors Gene Family AT3G19760 29.032 7.08e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00666 - - gmx:100795739 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00666 7 11049839 11062219 Pumo7g00666 7 11049839 11062219 ECH