Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00659 ATGACTGCAAAGGGACAGAGATTTGTGAGGTTTAAGGATTGGAAGTCACTTTCTTCTTCAAGTATTGAGCACAATGATTCTTCTAATGATGGATTTCACAAAAGAAAAGTTCAACCAAGCATAAGTTCTGTCAGTGATGAATCAATAACAAATTTGTCTTGTAGGAGCCATGTTCTTCATCCACAGGGGCCAACACTTCAGAAGTGGAACAAAATTTTTGTAAGCACAAGTGTGATGGCAATCTCTGTGGACCCGCTTTTCTTTTACATCCCAGTGATTGATGACAAGAGAAAATGCCTTGATTTGGATGGCACACTGAAGATTACTGCTAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACTGGGTTTATTGCACCTTCCTCTCGTGTATTTGGAAGGGGTGAGCTAGTTGATGATCCTTGGGCCATAGTAATGAGATACTTAAGCTCTTACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATGATCCCATTCCCAAAATGCGCAGTTCCTTATGTGGGAAAGGATTTGTTGAAGTATACCGTAATAGCACAGTACGTGCCAAGACTTCTGCGGATTTACCCGTTATTCAAAGAAGTAACAAGCACTTCAGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCTGTAGAATCAAGGTTGCGGTGCTGGCGCAGGCAGTTGAAGAATACTATGTTATTTCATGAATCCTACCTTAGCTGTGGACGTGGCAATGCTACTGTTCTATCACTTCTCAATTCTTCTTGCCCTTTTGGTGATCCACAAGATATTGATGACCCGGAAACTTTCAATTTTGGAATGTTTATAGAAGCTCTAAAGTATCGTGTGGTAGAAAATACTACAGATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGGCAAGGTTTCCAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCTGTCTTTGGATTGGTTCTATTTGCATCGCTTATTGGAAACATGCAGAAATATCTACAATCTACCACTGTGAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCTGATTTCCTGAAGGAAAGAATTAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTAATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGCGTCATCTTTGCTTGGATCTACTTAGAAAAGTGCCAATGTTTGAGAACATGGATAATCAGTTGTTAGATGCACTATGTGATAGACTGAAGCCAGTTCTTTACACAGAGAAAAGTTACATAGTTCGTGAAGGGGATCCAGTTGATGAAATGCTATTCATCATGCGTGGAAAACTTGCTACTGCCACAACAAATGCTGGAAGAACTGGTTTCTTCAACTCCTTTGAGATCAAGGCAGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCCAACTCCTCCACAAATCTACCCATTTCAACTAGAATAGTAGAAACTATATCAGAAGTAGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTCTATTCCTTGCAATGGAGGACATGGGGTGCATGTTTCATACAAGCAGCTTGGCGCAGATACAAGAAAAAGAAGGCTGAGAGGTTGTTACGTGAAGCAGAAGAAAGGATACAAGCTTTGGAAAATGAGGAAGGGTCCTCACCTAGCTTTGCTGCTACAGTATATGCATCAAGGTTTGCATCAAGTGCATTGCGCCACTTGCGAAGTGGTAAACGCACCAGAGTGCCACAGCCACAGAGATTGCTACCCCTGATGCCTCAGAAGCCAGCTGAGCCAGATTTCACTGCTGAGAAAGACTAA 2022 0.4174 MTAKGQRFVRFKDWKSLSSSSIEHNDSSNDGFHKRKVQPSISSVSDESITNLSCRSHVLHPQGPTLQKWNKIFVSTSVMAISVDPLFFYIPVIDDKRKCLDLDGTLKITASVLRTFFDLFYILHIIFQFRTGFIAPSSRVFGRGELVDDPWAIVMRYLSSYFIIDILSIIPLPQMVILAMIPFPKCAVPYVGKDLLKYTVIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESRLRCWRRQLKNTMLFHESYLSCGRGNATVLSLLNSSCPFGDPQDIDDPETFNFGMFIEALKYRVVENTTDFHHKFFYCFWWGLRSVSSVGQGFQTSTYVGEIIFAIFIAVFGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLRKVPMFENMDNQLLDALCDRLKPVLYTEKSYIVREGDPVDEMLFIMRGKLATATTNAGRTGFFNSFEIKAGDFCGEELLTWALDPNSSTNLPISTRIVETISEVEAFALMPDDLKFYSLQWRTWGACFIQAAWRRYKKKKAERLLREAEERIQALENEEGSSPSFAATVYASRFASSALRHLRSGKRTRVPQPQRLLPLMPQKPAEPDFTAEKD 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00659 673 FunFam Cyclic nucleotide-gated ion channel 1 391 455 - -
Pumo7g00659 673 CDD CAP_ED 464 568 IPR000595 -
Pumo7g00659 673 MobiDBLite consensus disorder prediction 644 673 - -
Pumo7g00659 673 ProSiteProfiles cAMP/cGMP binding motif profile. 464 548 IPR000595 -
Pumo7g00659 673 Gene3D Jelly Rolls 462 581 IPR014710 -
Pumo7g00659 673 Gene3D Helix hairpin bin 391 455 - -
Pumo7g00659 673 Coils Coil 597 617 - -
Pumo7g00659 673 FunFam Cyclic nucleotide-gated ion channel 1 462 580 - -
Pumo7g00659 673 SUPERFAMILY cAMP-binding domain-like 393 589 IPR018490 -
Pumo7g00659 673 PRINTS EAG/ELK/ERG potassium channel family signature 333 350 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo7g00659 673 PRINTS EAG/ELK/ERG potassium channel family signature 242 252 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo7g00659 673 PRINTS EAG/ELK/ERG potassium channel family signature 427 434 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo7g00659 673 PRINTS EAG/ELK/ERG potassium channel family signature 125 134 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo7g00659 673 PRINTS EAG/ELK/ERG potassium channel family signature 359 370 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo7g00659 673 PRINTS EAG/ELK/ERG potassium channel family signature 377 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo7g00659 673 Gene3D - 72 388 - -
Pumo7g00659 673 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 40 668 - -
Pumo7g00659 673 SUPERFAMILY Voltage-gated potassium channels 60 386 - -
Pumo7g00659 673 Pfam Ion transport protein 69 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo7g00659 673 SMART cnmp_10 464 587 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00659 Pumo-Chr7 10894410 10899104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00659 1 671 Ion Channels AT5G53130 59.418 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00659 K05391 - gmx:100795201 1191.02