Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00656 ATGGGCATCTTGGTAGTCCTTTTTCCCTTCTTCGTCTTTCCTGTCATATATGCTGCCTCAAATGATTGCCAATTTTCTATATGTGGCAACAGTAGTATCCTTATTCGTTTCCCCTTTCAACTAGAAGGTGAGCAAAATCCTTATTGTGGCTATCCTGGTTTCTACTTAATTTGTACGAATAATAGCAAAACGGTGCTAAAACTTCCTTACTCTAGTGAGTTCTATGTGCGCAACATTAATTATCTCACTCAAAAGATACAAGTCTACGACCCTGGTGATTGCCTCCCCAAACGTCTTCTGAGCCTCAATTTCTCAGCTTCTCCTTTTATTCCTACTTTTACTCGTAACTACACCTTCTTAAGCTGCCCATTTCAGAACGCAGGGTCGCAATTCATTCCCATAGACTGCCTCAGTAATTCCACAAATTTTGTATCAGCTGTCCCTTCACTGAGCTTGACCAATCCATTGCCTGAGTCTTGCTATGTTATTACAAGGGTTTCAGTCCCAGTTGCAGGGCCAGAGCAGCAGTATGAGCAGAATTTCAGAGATGAGCTTAGTGAAGATCTTCGATTAACATGGGATAGACCTGACTGCGGATATTGTGAATCGCGACAGCAATTGTGTGGATTTGATCCAAATAACAACACTCAACTTCTCTGCTTTTCTTACCATACAGGTACTTCGCGACGTGGAGTCCAAGTTTTCAGAATCATCACAATATGCATAGCTGGACCAGCAGCGGTGTTTGCAATTGTGATGGCATGTTGTGTGTGCTACAAAGACAGACTAGCCAACATTCGTAACAGTGCCATTGCGAGGTCTGCACCAGCTACAATATCGCCATCGCCACAAATTATGACCACGGGTCTCGACGAGTCCACGATTGAGTCCTATGAGAAGGTGGTGCTTGGAGAGAGTCGACGATTGCCTGGACCCAACAATGGATGTTGTTGGATATGCTTGTCGGAGTACAACAGCAAAGAGACCATAAGATTGATTCCTGAATGCAAACATTGCTTCCATGCTGATTGCATAGACGAGTGGCTTCGAATAAACACCACGTGCCCGGTTTGCCGTAACTCTCCCTCCCCTTCTCCTCTTCATGTTACGTCCATTGACCCCTAA 1125 0.4444 MGILVVLFPFFVFPVIYAASNDCQFSICGNSSILIRFPFQLEGEQNPYCGYPGFYLICTNNSKTVLKLPYSSEFYVRNINYLTQKIQVYDPGDCLPKRLLSLNFSASPFIPTFTRNYTFLSCPFQNAGSQFIPIDCLSNSTNFVSAVPSLSLTNPLPESCYVITRVSVPVAGPEQQYEQNFRDELSEDLRLTWDRPDCGYCESRQQLCGFDPNNNTQLLCFSYHTGTSRRGVQVFRIITICIAGPAAVFAIVMACCVCYKDRLANIRNSAIARSAPATISPSPQIMTTGLDESTIESYEKVVLGESRRLPGPNNGCCWICLSEYNSKETIRLIPECKHCFHADCIDEWLRINTTCPVCRNSPSPSPLHVTSIDP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00656 374 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Pumo7g00656 374 Pfam Wall-associated receptor kinase C-terminal 154 222 IPR032872 -
Pumo7g00656 374 SUPERFAMILY RING/U-box 316 362 - -
Pumo7g00656 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 363 IPR046948 -
Pumo7g00656 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 364 IPR013083 -
Pumo7g00656 374 CDD RING-H2_EL5-like 316 359 - -
Pumo7g00656 374 SMART ring_2 317 358 IPR001841 -
Pumo7g00656 374 Pfam Ring finger domain 317 359 IPR001841 -
Pumo7g00656 374 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
Pumo7g00656 374 SMART ringv_2 316 359 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00656 Pumo-Chr7 10729202 10732409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00656 28 364 C3H Transcription Factor Family AT2G25410 44.380 1.11e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00656 - - gmx:100798415 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00656 7 10729202 10732409 Pumo7g00656 7 10729202 10732409 ECH
Pumo5g03902 5 89103147 89105075 Pumo7g00656 7 10729202 10732409 PCT