Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00644 ATGCAAATTGATTTCTCAGGAGCCACTTCGAGGGCTTCTGGGAGATCAATCATTGCTGAGTCTGAGATTTCTGATGTTGAGGCCTCGTGCAAGGAGGAGAGAGTGAGTGTTGCCGATGACAGGAGGCCGAGGAAGCGGGGGAGGAAGCCGGCTAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGGCGGGAGAAGCTGAACCAGCGGTTCTATGCACTGCGAGCTGTTGTTCCAAATATCTCTAAGATGGACAAGGCGTCGCTGTTGGGAGATGCTATTGCTTACATCAATGAGCTTCAAGAAAAACTCAAGACCATGGAGTCTGAGAGAGAGAGGTTTGGAAGCACATCTATGGATGGACCAGTATTGGAGGCCAATGCTAGAGAAGAAAATCATCAGAATGGAGCTCTCGACGTGGATGTTCAAGCTGCACAAGATGGGGTCATTGTTAAGGTGAGCTGTCCTATTGATGTTCACCCAGTTTCAAAAGTCATTCAAACCTTCAAAGAGGCAGAAATTGGTGTTGTTGAATCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTCGTAGTTAAATCCCACGGACCTGATCAGCTGACGAAGGATAAGTTGATTGCATTGTTTTCCAAAGAATCCAACACCATACAGACATCATGA 678 0.4661 MQIDFSGATSRASGRSIIAESEISDVEASCKEERVSVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKLKTMESERERFGSTSMDGPVLEANAREENHQNGALDVDVQAAQDGVIVKVSCPIDVHPVSKVIQTFKEAEIGVVESKLTAANDTVFHTFVVKSHGPDQLTKDKLIALFSKESNTIQTS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00644 225 CDD bHLH_AtAIB_like 52 117 - -
Pumo7g00644 225 MobiDBLite consensus disorder prediction 29 66 - -
Pumo7g00644 225 Pfam Helix-loop-helix DNA-binding domain 59 105 IPR011598 GO:0046983
Pumo7g00644 225 Coils Coil 94 121 - -
Pumo7g00644 225 Gene3D - 48 120 IPR036638 GO:0046983
Pumo7g00644 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 104 IPR011598 GO:0046983
Pumo7g00644 225 SMART finulus 61 110 IPR011598 GO:0046983
Pumo7g00644 225 FunFam Transcription factor bHLH13 48 122 - -
Pumo7g00644 225 PANTHER MYC 14 213 IPR045084 GO:0003700|GO:0006355
Pumo7g00644 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 119 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00644 Pumo-Chr7 10576251 10576928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00644 2 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46510 54.661 1.12e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g00644 HLH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00644 - - gmx:100807078 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00644 7 10576251 10576928 Pumo7g00644 7 10576251 10576928 ECH
Pumo5g03916 5 89229762 89231949 Pumo7g00644 7 10576251 10576928 PCT