Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00642 ATGGAGGAGCAACAGCCACAACATAATAACAATAGCGCCCCCGACGAGGAGGCAGCCACCGCCACCACGAGCTCCGGCGACAAGCCCGCCACCCCTCGCGGCGGCGGCACCCGCCACCCGGTCTTCCGCGGCGTCCGCAAGCGCCGCTGGGGCAAATGGGTCTCCGAAATCCGGGAGCCGAGGAAAAAGTCCCGCATATGGCTCGGCTCCTTCCCGGCGCCGGAGATGGCGGCGAAGGCCTACGACGTCGCCGCCTACTGCCTCAAAGGCCGCAAGGCGCAGCTCAACTTCCCCGACGAGGTCCACCGTCTCCCGCCGCTCCCCTCCGCCTGCACCGCCCGGGACATCCAGGCAGCCGCCGCCAAGGCCGCCCACATGATGATGGTCCAGGCCGCCGCCGCCTCAGACTCGCCGGAGAAAAGCAGCAGCATTACCTCCGACTGCGACGGCGACGGCGACGACTTCTGGAGCGAAATTGAGCTGCCGGAGCTCCTCCACCGGAAGTGGTGGGCCTCCGATCGCGACGTCGTCACGCCGTGGCCGGAGGCTGAGCTTCCGCCCCAGCAGCCCTTCACCACGGCGTGCTTGTAG 591 0.687 MEEQQPQHNNNSAPDEEAATATTSSGDKPATPRGGGTRHPVFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSACTARDIQAAAAKAAHMMMVQAAAASDSPEKSSSITSDCDGDGDDFWSEIELPELLHRKWWASDRDVVTPWPEAELPPQQPFTTACL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00642 196 PRINTS Ethylene responsive element binding protein signature 80 100 IPR001471 GO:0003700|GO:0006355
Pumo7g00642 196 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Pumo7g00642 196 MobiDBLite consensus disorder prediction 132 151 - -
Pumo7g00642 196 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Pumo7g00642 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 164 - -
Pumo7g00642 196 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Pumo7g00642 196 SUPERFAMILY DNA-binding domain 41 100 IPR016177 GO:0003677
Pumo7g00642 196 MobiDBLite consensus disorder prediction 1 44 - -
Pumo7g00642 196 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Pumo7g00642 196 MobiDBLite consensus disorder prediction 1 30 - -
Pumo7g00642 196 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Pumo7g00642 196 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Pumo7g00642 196 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00642 Pumo-Chr7 10543714 10544653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00642 1 165 AP2-EREBP Transcription Factor Family AT1G01250 58.182 1.44e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo7g00642 AP2 4.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00642 K09286 - gmx:100802845 327.02