Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00640 ATGGCACATCTGGAGTGTAATCTGGGGGCCCCTGGGAGTGGAACTTCTCAACCGGAAAAAGGTTTGAAGGATGATGATCTGTATAGAGAGCTATGGAAGCTCTGTGCAGGGCCGTTGGTGGATGTTCCTCGTACTGGGGACAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCTACGGATCAGGAATTGAACCAGGAAATTCCCCATTTCAATCTCCCGGCCAAGATTTTTTGCCGTGTTGTGAACATTCAGTTGTTGGCGGAACAAGACACTGATGAGGTTTATGCTTGTATCGCTTTGCTTCCAGAATCAGATCAAACCGAGCCTACAAATCCTGATCCAAATGTTTCTGAGGCCCCAAAACAGAAGTTTCAATCATTTTGCAAGATATTAACTGCCTCTGATACTAGCACACATGGAGGATTTTCGGTTTTGCGGAAGCATGCTACTGAGTGCCTGCCTCCATTGGACATGACTCAAGCAACCCCAACTCAGGAGTTGGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCACATATATAGAGGCCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTTGCATCCAAAAGATTGGTTGCTGGGGATGCTTTTGTGTTTCTAAGGGGAGAGCATGGACAATTGAGAGTTGGTGTTAGGCGTTTAGCACGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCACCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTCATGACTCGTACAATGTTTTTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTGGTTTGAACAAATATCTGGAGGCAGTCAACAATAAATTTTCACTTGGCATGAGATTCAAAATGAGATTTGAGGGAGATGACTCACCTGAGAGAAGGTTTTCTGGTACTATTGTTGGGGTTGGAGACGTGTCTGCAGGGTGGTCAAATTCTCAGTGGCGCTCATTGAAGGTTCAATGGGATGAACCAGCAATAATTCCAAGGCCAGATAGAGTTTCTTGTTGGGAGATAGAGCCTTTTGTAGCTTCTACTGCATTGAATGTCACACAATCAGCAGTTAAGGGTAAAAGGTCTAGGCCTGCTGATGTTTCATCTTCTGCTGCTTCAGGTTTCTGGTATCATGGTTCTTCCAATGAGCTTAGTCAATTAGGTGCTGCAACTGCTGAGGTCCAGAGCAAGGAAAACCAGGTTCTTCCATGCTCTCTGAGGCAGAAAGACATTATTAATAGCAATCCAATTAATGCTAACTCTAGCATCAGCTCTAGGGTCCGGATGGAAGGAGCATGGCCTTCTTCACCACATTTGAATGTCACTCCAAACCTTTTTTCTGATCCCAATAACAACAACAATGGTGTTTTGGCACTATCACCGATCTCTGGTTATCCTAATGTTCCATCTAGATCAAGTGATGGCCCCACATGTGACCGCGGCGTGGAAGATGGGAAAAAGACTGAGAGTTCCCTTGATTGCTGGTTATTTGGAGTTAATTTGACTAACAATTGTAGCAATGCTGTTATTAATCCTTCAGAGAGAGAAGTGAGAGGTCCAAGCTCAAGTGTGGTTCCTAGTGGTCCCAAAGAATCTATTCCTGCAGCTGCATGTGAAACTGAGAGGGTTCAGACTCCCAACTATTCACTGTCCAACAAGGGGCAGAAGCAAATTATTTCTGAGGCATCACCAAATGAGTGGCAGAACAAGCAGGCCACTGTACCATCCATGAGGACGCGGACTAAGGTGCAAATGCAAGGTGTTGCTATTGGTCGTGCATTTGACTTGACCACGTTGAGTGGCTATGATGATCTCATAGATGAACTTGAGAAATTGTTTGATATCAGAGGAGAGCTGCGTTCACAAGACAAATGGGCTGTTACTTTCACAGATGATGAAAATGACATGATGCTCGTGGGTGATGATCCATGGCCGGAGTTCTGCAACATGGTGAAGAGGATTTTCATTTGTCCAAGGGAGGACTTGAAGAAGATGAAATGCTGCAAGCTACCTGCTTCTTCATCAGAGGTTGAAGAGACTCTATTGAGCCCAGATTCACAGAATAGGGATGAGACTCAGCAGTCTCACATGCCTTAG 2145 0.4522 MAHLECNLGAPGSGTSQPEKGLKDDDLYRELWKLCAGPLVDVPRTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPAKIFCRVVNIQLLAEQDTDEVYACIALLPESDQTEPTNPDPNVSEAPKQKFQSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEAVNNKFSLGMRFKMRFEGDDSPERRFSGTIVGVGDVSAGWSNSQWRSLKVQWDEPAIIPRPDRVSCWEIEPFVASTALNVTQSAVKGKRSRPADVSSSAASGFWYHGSSNELSQLGAATAEVQSKENQVLPCSLRQKDIINSNPINANSSISSRVRMEGAWPSSPHLNVTPNLFSDPNNNNNGVLALSPISGYPNVPSRSSDGPTCDRGVEDGKKTESSLDCWLFGVNLTNNCSNAVINPSEREVRGPSSSVVPSGPKESIPAAACETERVQTPNYSLSNKGQKQIISEASPNEWQNKQATVPSMRTRTKVQMQGVAIGRAFDLTTLSGYDDLIDELEKLFDIRGELRSQDKWAVTFTDDENDMMLVGDDPWPEFCNMVKRIFICPREDLKKMKCCKLPASSSEVEETLLSPDSQNRDETQQSHMP 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00640 714 Gene3D - 293 365 - -
Pumo7g00640 714 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 682 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo7g00640 714 SMART B3_2 132 234 IPR003340 GO:0003677
Pumo7g00640 714 Gene3D - 129 233 IPR015300 -
Pumo7g00640 714 SUPERFAMILY DNA-binding pseudobarrel domain 122 261 IPR015300 -
Pumo7g00640 714 MobiDBLite consensus disorder prediction 1 22 - -
Pumo7g00640 714 FunFam Auxin response factor 293 364 - -
Pumo7g00640 714 SUPERFAMILY CAD & PB1 domains 590 670 - -
Pumo7g00640 714 MobiDBLite consensus disorder prediction 529 544 - -
Pumo7g00640 714 MobiDBLite consensus disorder prediction 692 714 - -
Pumo7g00640 714 Pfam B3 DNA binding domain 132 232 IPR003340 GO:0003677
Pumo7g00640 714 MobiDBLite consensus disorder prediction 689 714 - -
Pumo7g00640 714 Pfam AUX/IAA family 637 673 IPR033389 -
Pumo7g00640 714 Pfam AUX/IAA family 586 630 IPR033389 -
Pumo7g00640 714 CDD B3_DNA 131 232 IPR003340 GO:0003677
Pumo7g00640 714 ProSiteProfiles PB1 domain profile. 594 675 IPR000270 GO:0005515
Pumo7g00640 714 Gene3D - 590 682 - -
Pumo7g00640 714 FunFam Auxin response factor 130 234 - -
Pumo7g00640 714 MobiDBLite consensus disorder prediction 529 548 - -
Pumo7g00640 714 Pfam Auxin response factor 258 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo7g00640 714 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00640 Pumo-Chr7 10481815 10486950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00640 21 686 B3 DNA Binding Superfamily AT2G46530 53.125 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo7g00640 B3 1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00640 K14486 - gmx:100790981 1317.75