Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00625 ATGAGGCCGGTTTTTGCTGGGAACTTGGAGTACGATACTCGTCAATCAGAGCTCGAACGCTTGTTCTCAAAGTATGGAAGGATTGACCGCGTGGACATGAAATCTGGCTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCAGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGAAAAGCGAAGGCTGTCAGTGGAGTGGGCTAGGGGTGAACGTGGACGTCACCGTGATGGATCTAAGGCAAACCAGAGGCCAACAAAAACCCTGTTTGTGATTAACTTTGACCCAATCCGTACTAGAGTTCGTGATATAGAAAAACACTTTGAACCTTATGGGAATGTTCTTCATGTTCGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATCCTGGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATGGTGAGAGGGGTGACAATTATGACAGTCCTAGAAGAGGGGGTTATGAGAGATCACCCAGTCCAGGTTATCACAAGCGGCCAAGTCCTGACTATGGTCGTCCACGCAGCCCTGCCTATGATAGGTATAATGGTGGACCAGACAGGCGGAGGAGTCCTGATTATGGCAGGCGCAGGAGTCCTGATTATGGAAGGCGCAGGAGTCCTGATTATGGGAAGCCCAGGAGTCCCTGA 723 0.4786 MRPVFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGYERSPSPGYHKRPSPDYGRPRSPAYDRYNGGPDRRRSPDYGRRRSPDYGRRRSPDYGKPRSP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00625 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Pumo7g00625 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Pumo7g00625 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Pumo7g00625 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pumo7g00625 240 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 236 - -
Pumo7g00625 240 CDD RRM2_AtRSp31_like 92 161 - -
Pumo7g00625 240 MobiDBLite consensus disorder prediction 206 240 - -
Pumo7g00625 240 MobiDBLite consensus disorder prediction 164 240 - -
Pumo7g00625 240 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Pumo7g00625 240 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Pumo7g00625 240 Gene3D - 1 83 IPR012677 -
Pumo7g00625 240 Gene3D - 84 173 IPR012677 -
Pumo7g00625 240 SMART rrm1_1 92 158 IPR000504 GO:0003723
Pumo7g00625 240 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pumo7g00625 240 SUPERFAMILY RNA-binding domain, RBD 2 164 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00625 Pumo-Chr7 10229107 10232022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00625 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 1.34e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00625 7 10229107 10232022 Pumo7g00625 7 10229107 10232022 ECH