Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00622 ATGATGGTTCTAGATATGTTATCTGGTCCGACCGGAACAGCCATTTCTCAAACTGTAGAAACTATTGCTGATTTCGTAGTTAATGCTAACGATGTCCTTGTGAAGAAGGATAGTTTTAAGGAACTTGGTGCTTACTTGGAAAGAATTAAGCCTGTCTTAGAAGAATTGAGGAAAGGAAAAGTCAGTGATTCTGAGAATTTCAACCGCGCCATTGAGATCATAAATAAAGAAATTAAAGATGCAAACCAACTACGTCTAGATTGCAGCAAGAAGAGCAGGGTTTATCTACTAATGAACTGCAGGTCCATTGCTAAGAGCTTAGAAAAACAAACAAAAGAGCTGAGTACGGCACTTGGTCTTCTTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATAGTTGAGGAAATTAAAAAGCTATGTGAGAATATGCAGACAGCTGCATTTAAGGCAGCTCTAGCTGAAGAAGAGATTTTAGAGAAAATAGAGTCAGGGATAACGGAAATCAATGTTGATCGTTCCTACGCCAATAATTTGCTTAGTCTCATTGCTGAGGCTGTTGGGATTAGGAATGAGAGGTCAACAATAAAGATGGAACTTGAAGAGTTTAAGAGTGAGATTGAAAATGCACGTGTTAGGAAGGACTTGGTTGAAGCTATGCATATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACTTAAGGACAAGGAACTCAAATACTTTGCAAAACGCCAATCTTTGGGTAGTCAAATCTTGGACCCTTTGCAGTCATTCTATTGCCCCATCACCCAGGATGTTATGGTGGATCCTGTAGAAATTTCATCAGGGCAGACTTTTGAGAGAAGTGCAATAGAAAAGTGGTTTGCAGAAGGAAACAAATTGTGCCCCTTGACCTTGATTCCTTTAGACACATCAATTTTGAGACCTAACAAAAAGTTGAAACAATCCATACAAGAGTGGAAGGATAGAAATATAATGATTACAATTGCTACATTGAAAGAAAAAATCCAGTCTGGAAATGATGAGGAAGTGCTGGATGATCTGCAAACTCTTCAGACTTTCTGTGAAGAAAAAGACCAACACAGGGAATGGGTGATTCTGGAGAATTACATACCAACTCTCATCCAAATTCTGTCAAAAAGTAACCGTGATATAAGGAAATTATCTCTTGTCATCCTTGGCATGCTGGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTTCAACCGTTGATCGTGCAATTGAATCAATTGTCAAGTCTCTTGGACGTCGTCCAGAGGAAAGGAAGTTAGCAGTGGCATTACTGCTCGAATTATCCAAATATGATTTGGCACGAGAACACATTGGAAAAGCTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACAGAGCTATTGGAGAATCTTTCATACTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTAAAGATGACTATGGCCACAAATTTAGCAGAAATGGAATTAACTGACCACAATAGGGAGTCCTTGTTTGATGGCGGTGTACTGGTTCCTCTTCTTCACATGTTCTCACATAATGATCTACAGGTGAAGACAGTTGCTGTTAAAGCTCTTAGGAATTTATCCAGTTCAAAGAAAAATGGACAGGAAATGATAAGACAAGGGGCTGCACGGCCACTACTTAACCTCCTTTTCAATCAAAGCATACACACCGCAAGTTTGTGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACCATCTCCCAGGATGCTCAAACACCTGTTTTATTACTAGATTCTGATGATGACGTTTTTCATCTCTTCCATTTAGTTAGTGTCACACAGCCTGTTTTGCAACAGAACATTATCCAGACATTTTATGCCTTGTGTCAAACACCCTCAGCTTCACATATCAGAACCAAATTACAAGAGTGCTCAGCGGTTCCAAAGTTGGTTCAACTGTGTGAGAATGAAAACCTAAACCTACGAGCAAGCGCTGTAAAGTTGTTCTCATGCTTGGTAGAGAGTTGTGATGAAGGCATCATACAGGAGCATGTGAATCAGAAATGCATTAATACTCTACTCCAGATCATAAAATCTCCATCTGATGAAGAGGAAGTACTTTCTGCCATGGGAATAATATGCTATCTTCCAGAAATTGACCAGATAACTCAATGGCTTCTGGATGCTGGTGCACTGCCAATCATTAAAAGTTATGTCCAAGATGGGAAAGACAGAGATCATCAAAAGAATAACTTGGTAGAGAATGCCATTGGTGCCCTACATCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAGAGTGCAGCTGAAACTGGGATCATAACTGTTTTAGTGCAGCTGCTTGAAAATGGAACAAATTTGACAAAACAACGCGTGGCACAGTCTCTTGCTCAATTTTCCAAAAGCTCATTTAGTCTGAGCCGGCCGATACCAAAGCGCAAAGGACTATGGTGCTTCTCAGCTTCTGCTGATATTGGCTGCATGGTTCATGGAGGAATATGCTCAGTCAAATCATCATTTTGCCTTTTAGAGGCTGATGCAGTGAGACCACTCACAATGACTCTTGGGGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAAGGTGAAAAACTGCAGAGTGGTATCAAAGTGCTTTCAGAAGCAAATGCCATACCACTAATAATAAGATACCTTGTTTCCCCCTCCCCTGGCTTGCAGGAGAAGTCTCTACATGCTTTGGAAAGGATTTTTCGGATAGTCGAATACAAACAGATGTATGGAGCCTCAGCTCAAATGCCTCTGGTTGACTTAACTCAGAGGGGTAATGGTAGTGTCAGATCCATGTCAGCTAGAATATTGGCACATTTAAACGTGCTTCATGATCAATCTTCATATTTCTAA 3012 0.4031 MMVLDMLSGPTGTAISQTVETIADFVVNANDVLVKKDSFKELGAYLERIKPVLEELRKGKVSDSENFNRAIEIINKEIKDANQLRLDCSKKSRVYLLMNCRSIAKSLEKQTKELSTALGLLPLATTGLSSGIVEEIKKLCENMQTAAFKAALAEEEILEKIESGITEINVDRSYANNLLSLIAEAVGIRNERSTIKMELEEFKSEIENARVRKDLVEAMHMDQIIALLERADAASSLKDKELKYFAKRQSLGSQILDPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSILRPNKKLKQSIQEWKDRNIMITIATLKEKIQSGNDEEVLDDLQTLQTFCEEKDQHREWVILENYIPTLIQILSKSNRDIRKLSLVILGMLAKDNEEAKERISTVDRAIESIVKSLGRRPEERKLAVALLLELSKYDLAREHIGKAQGCILLLVTMSSGDDNQAARDATELLENLSYSDQNVIQMAKANYFKHLLQRLSTGPDDVKMTMATNLAEMELTDHNRESLFDGGVLVPLLHMFSHNDLQVKTVAVKALRNLSSSKKNGQEMIRQGAARPLLNLLFNQSIHTASLWEDVAAIIMQLAASTISQDAQTPVLLLDSDDDVFHLFHLVSVTQPVLQQNIIQTFYALCQTPSASHIRTKLQECSAVPKLVQLCENENLNLRASAVKLFSCLVESCDEGIIQEHVNQKCINTLLQIIKSPSDEEEVLSAMGIICYLPEIDQITQWLLDAGALPIIKSYVQDGKDRDHQKNNLVENAIGALHRFTVPTNLEWQKSAAETGIITVLVQLLENGTNLTKQRVAQSLAQFSKSSFSLSRPIPKRKGLWCFSASADIGCMVHGGICSVKSSFCLLEADAVRPLTMTLGESDPGVCEASLDALLTLIEGEKLQSGIKVLSEANAIPLIIRYLVSPSPGLQEKSLHALERIFRIVEYKQMYGASAQMPLVDLTQRGNGSVRSMSARILAHLNVLHDQSSYF 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00622 1003 Gene3D - 13 125 IPR036537 GO:0007166
Pumo7g00622 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 334 IPR013083 -
Pumo7g00622 1003 SUPERFAMILY ARM repeat 332 993 IPR016024 -
Pumo7g00622 1003 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Pumo7g00622 1003 Gene3D - 867 1001 IPR011989 -
Pumo7g00622 1003 SUPERFAMILY RING/U-box 248 328 - -
Pumo7g00622 1003 CDD RING-Ubox_PUB 262 311 IPR045210 -
Pumo7g00622 1003 Coils Coil 64 84 - -
Pumo7g00622 1003 Gene3D - 628 844 IPR011989 -
Pumo7g00622 1003 SMART arm_5 705 744 IPR000225 GO:0005515
Pumo7g00622 1003 SMART arm_5 528 568 IPR000225 GO:0005515
Pumo7g00622 1003 SMART arm_5 748 794 IPR000225 GO:0005515
Pumo7g00622 1003 SMART arm_5 569 612 IPR000225 GO:0005515
Pumo7g00622 1003 SMART arm_5 663 703 IPR000225 GO:0005515
Pumo7g00622 1003 SMART arm_5 915 955 IPR000225 GO:0005515
Pumo7g00622 1003 SMART arm_5 362 402 IPR000225 GO:0005515
Pumo7g00622 1003 SMART arm_5 445 486 IPR000225 GO:0005515
Pumo7g00622 1003 Pfam Armadillo-like 435 601 IPR006911 -
Pumo7g00622 1003 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Pumo7g00622 1003 Pfam U-box domain 262 327 IPR003613 GO:0004842|GO:0016567
Pumo7g00622 1003 Coils Coil 192 219 - -
Pumo7g00622 1003 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Pumo7g00622 1003 Gene3D - 335 627 IPR011989 -
Pumo7g00622 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1003 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00622 Pumo-Chr7 10205660 10212405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00622 260 1003 U-box Gene Family AT1G76390 28.662 8.67e-65 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00622 - - gmx:100799969 1739.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00622 7 10205660 10212405 Pumo7g00622 7 10205660 10212405 ECH