Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00609 ATGGAATATACTTATTCAGCAGAAGCTGCAGAGGCAGAAACTTACACAAGTAGCAGCACCACCCCATCATCTGCCATGAGATCAAAGAAGAGAAACAACATCAACACAAGAAGGTTCAGTGATGAACAAATCAAATCATTGGAGACCATGTTTGAGTCAGAGTCAAGGCTTGAGCCTAGAAAGAAGCTGCAGCTGGCAAGAGAGCTTGGACTGCAGCCAAGACAAGTTGCTATATGGTTTCAGAACAAGAGGGCTAGGTGGAAGTCAAAGCAACTAGAGAGAGACTATGGCATACTCCAATCCAATTACAACAGTTTGGCTTCACGTTTTGAAGCTCTTAAGAAGGAAAAGCAAACATTACTAATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCAATGGAGGCAGGTCAGAGATGCACACAAGTTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAAGCTGAGGGAAAGCCAAGCCCATCAATGGAAAGATCAGAACATGTACTTGGTGTTCTGTCTGATGATGACACAAGCATAAAGGTGGAAGACTTTGGCCTAGAAGATGAACCTGGCCTTCTGAATTTTGCTGAGCATGCTGATGGTTCCTTGACTTCACCAGAAGATTGGAGTGCTTTTGAATCCAATGATCTATTAGGCCAATCAAGCAGTGATTACCAATGGTGGGACTTCTGGTCCTGA 729 0.4376 MEYTYSAEAAEAETYTSSSTTPSSAMRSKKRNNINTRRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPMEAGQRCTQVEAANSMDSESENGGTMKCEAEGKPSPSMERSEHVLGVLSDDDTSIKVEDFGLEDEPGLLNFAEHADGSLTSPEDWSAFESNDLLGQSSSDYQWWDFWS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00609 242 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Pumo7g00609 242 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Pumo7g00609 242 CDD homeodomain 37 91 IPR001356 GO:0003677
Pumo7g00609 242 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Pumo7g00609 242 SUPERFAMILY Homeodomain-like 17 92 IPR009057 -
Pumo7g00609 242 Gene3D - 25 97 - -
Pumo7g00609 242 Pfam Homeobox associated leucine zipper 90 132 IPR003106 GO:0006355|GO:0043565
Pumo7g00609 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 170 IPR045224 GO:0003700
Pumo7g00609 242 MobiDBLite consensus disorder prediction 1 38 - -
Pumo7g00609 242 Pfam Homeodomain 37 88 IPR001356 GO:0003677
Pumo7g00609 242 SMART HOX_1 27 94 IPR001356 GO:0003677
Pumo7g00609 242 MobiDBLite consensus disorder prediction 10 30 - -
Pumo7g00609 242 FunFam Homeobox-leucine zipper protein ATHB-7 17 90 - -
Pumo7g00609 242 Coils Coil 110 130 - -
Pumo7g00609 242 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Pumo7g00609 242 MobiDBLite consensus disorder prediction 149 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00609 Pumo-Chr7 9987872 9989516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00609 26 242 Homeobox Transcription Factor Family AT2G46680 52.966 3.33e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo7g00609 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00609 K09338 - gmx:100797862 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00609 7 9987872 9989516 Pumo7g00609 7 9987872 9989516 ECH