Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00603 ATGCCCAAGCCTTCTCCCCATTTGTTTCATTCTACCTCACTCTTCCAACCTCATCACTCCCCACACACACTTACTTCTAGTTCTTCCCACATGGAGGAATTAATCATCTCTCCTTCTTCATCCTCCTCTTTTGTCTCTCTACCCCAAGAAAACCCAACACCAACACCAACCCTTCAACAAAAACTCCAATTTCTCCTCCAAAGCCAACCCGAATGGTGGGTCTACGCCATTTTCTGGCAAGCCTCACACGACGACAATGGCAGCCTCTACTTATCCTTCGGAGAGGGCCATTTCCAAGGCACCAAAGAAACTTCCCCAAAACTACTAACCATTCCCACAAAGAAGTTCATGAAAACACCCTCAAACGACAACATCAACGACGCCGAGTGGTTCTACGTCATGTCGTTGACTCGCACCTTCCCTATCAACAATGCTACTTCTAATTCCACCACCCCTTCTTCACTCCCCGGCAAGTCCTTCGCTTTGGGCTCCGTGCTCTGGCTCAACAACAAGCACGAGCTCCAATTCTACAACTGCGAGAGAACCAACGAGGCCCACGTGCACGGGATCGAGACGCTTATCTGCATCCCCACGCCAAACGGCGTCGTCGAAATGGGCTCCTACGACAGCATCAAACAAAACTGGAGCCTCGTACAGCACGTGAAGTCTCTCTTCCAAGCCCCTCCAGATCCGGTCACCGTCCAAATCCTCGACGACCACACCATCTCCTTCGCCGACATCGGCATCGTCGCCGGGGTCCACGAAACCAAAAAACGGAAACAAATCACCCAAACACCACCCAGCAAAAACGACAACTATGTCGACTCCGAACACTCTGATTCGGATTGTCCAACGTTGCCCACCCCGAGGACAACCTCGGAGCCCAAAAAACGAGGCCGAAAACCGGTTCTCGGACGCGAGACTCCGGTAAACCACGTGGAGGCAGAGCGGCAACGCAGGGAGAAGCTCAACCATCGCTTCTATGCCTTACGAGCTGTGGTTCCGAACGTTTCGAGGATGGACAAGGCTTCGTTGCTGTCCGATGCTGTTGCCTACATCAACGAACTCAAAGCCAAGATTGAGTACTTGGAATCGCAGCAGCCAAGAGAGGGTAATAAAAAAGTCAAGACAGAAATGACAGACACTCTGGATAACCAAAGCACCGCCACGACATCGACCGTCGTGGACCAGAGCGGGCCTGGACCTAGATCGGGTCCAGGCCCGTTTGGACTCGAGGTCGATGTGAAGATCGTGGGGCCCGACTGCCATGGTGAGGGTACAATCGGAAAATGTGAACCACCCTGGGGCGAGGTTAATGGGTGCTTTGAGGGACCTAGAGTTTCAGGTCCACCACGCTAG 1359 0.5276 MPKPSPHLFHSTSLFQPHHSPHTLTSSSSHMEELIISPSSSSSFVSLPQENPTPTPTLQQKLQFLLQSQPEWWVYAIFWQASHDDNGSLYLSFGEGHFQGTKETSPKLLTIPTKKFMKTPSNDNINDAEWFYVMSLTRTFPINNATSNSTTPSSLPGKSFALGSVLWLNNKHELQFYNCERTNEAHVHGIETLICIPTPNGVVEMGSYDSIKQNWSLVQHVKSLFQAPPDPVTVQILDDHTISFADIGIVAGVHETKKRKQITQTPPSKNDNYVDSEHSDSDCPTLPTPRTTSEPKKRGRKPVLGRETPVNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEYLESQQPREGNKKVKTEMTDTLDNQSTATTSTVVDQSGPGPRSGPGPFGLEVDVKIVGPDCHGEGTIGKCEPPWGEVNGCFEGPRVSGPPR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00603 452 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 58 225 IPR025610 -
Pumo7g00603 452 Gene3D - 305 372 IPR036638 GO:0046983
Pumo7g00603 452 MobiDBLite consensus disorder prediction 293 319 - -
Pumo7g00603 452 Pfam Helix-loop-helix DNA-binding domain 311 356 IPR011598 GO:0046983
Pumo7g00603 452 PANTHER MYC 42 419 IPR045084 GO:0003700|GO:0006355
Pumo7g00603 452 MobiDBLite consensus disorder prediction 256 319 - -
Pumo7g00603 452 MobiDBLite consensus disorder prediction 1 31 - -
Pumo7g00603 452 CDD bHLH_AtAIB_like 305 381 - -
Pumo7g00603 452 SMART finulus 313 362 IPR011598 GO:0046983
Pumo7g00603 452 MobiDBLite consensus disorder prediction 426 452 - -
Pumo7g00603 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 356 IPR011598 GO:0046983
Pumo7g00603 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 368 IPR036638 GO:0046983
Pumo7g00603 452 MobiDBLite consensus disorder prediction 9 31 - -
Pumo7g00603 452 MobiDBLite consensus disorder prediction 380 412 - -
Pumo7g00603 452 MobiDBLite consensus disorder prediction 381 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00603 Pumo-Chr7 9878353 9880407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00603 54 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.076 1.00e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g00603 bHLH-MYC_N 1.1e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00603 - K13422 gmx:100804965 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00603 7 9878353 9880407 Pumo7g00603 7 9878353 9880407 ECH