Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00595 ATGTCTCAACAAAGGCAAACTCAGATGGTGGGTGGTAACAACCCGGACCAATATAGTGACACAACGTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGATAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGTCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGGAGGGCTAACTGCAACCTTGCTTCTCTTGGTGCAAACAATAACCGACCACCAACTTTTCAGCATGGTGCAGGACGGTTCAGGCCTCCACCTGGACTAGTGGCATCACCTGCTTATCATGGTTCTTCATCTACATTTTTCCATCAACCCCCTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACACCTTGTATCCTACGAGCTATTATAATCTCTATGGAGTTCCGCAGTTTTCAGCTTACTACCCATCTGCTGGAGCAGCTTCTGGGGCAGTAGGGTTGATCCACAATATCTACCCCTTTTATGGTCAATATGCACAGGGTATTCAGGCTCATGGTTTTGGGGTTCAATACCCCCAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATATCCTTCTTCAGTGGCAGTGCCAACTACTAGTGCAGTAACAGGAATTGCAACCACAACTACAACTACAACAACATCAACATCAACATCAACAGGTGTGGCAGCAGCAGTTGCTGGTACTTCACAAGCCTCTCAAGCAGCTTCTGAACAAAACACTACATCCACAAGGATACAGAACTTTCAAGGCTAA 897 0.4548 MSQQRQTQMVGGNNPDQYSDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANNNRPPTFQHGAGRFRPPPGLVASPAYHGSSSTFFHQPPRQYTFPYSAYGYSGYSQDTLYPTSYYNLYGVPQFSAYYPSAGAASGAVGLIHNIYPFYGQYAQGIQAHGFGVQYPQMAQFPFLPQHYGSTGILSYPSSVAVPTTSAVTGIATTTTTTTTSTSTSTGVAAAVAGTSQASQAASEQNTTSTRIQNFQG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00595 298 PANTHER BOULE-RELATED 12 264 - -
Pumo7g00595 298 Gene3D - 1 116 IPR012677 -
Pumo7g00595 298 SUPERFAMILY RNA-binding domain, RBD 11 122 IPR035979 GO:0003676
Pumo7g00595 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Pumo7g00595 298 CDD RRM_RBM24_RBM38_like 24 99 - -
Pumo7g00595 298 FunFam RNA-binding protein 24-B isoform X1 11 117 - -
Pumo7g00595 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Pumo7g00595 298 SMART rrm1_1 25 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00595 Pumo-Chr7 9687198 9689238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00595 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 6.10e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00595 - - gmx:100786208 487.263