Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00580 ATGCGACCTAACAGTAACACTCTCCTTCACACTCACACCTTCGTTACACTTACACCCTCTTCTTCCTATTCTTCCCTGAAACTGTGCAAACCTCAAGTGAAACGATTCGTTTTGCATTTCGCGTATCCAAAGCGTTCGCGCACATCTCTAGAACCTTCTTCTTCTTCTTTCTCTCCTCTGAGGAAAACTAGGGAGGTGGTTGAAGAATATGTTTACCCACCGCAAAACGATGACGTTTTGGAGGAGGAAGAAGAAGAAGAAGAAGAGAAGAAGAAGCTTGGAAAAGCGTGTGAAGTGTACGTGTGCAACCTCCCCCGAAGCTGTGACGCAGCATACCTACTTGATATGTTCAGACCTTATGGAACCATTCTATCTGTCGAGGTTTGCCGGAATGCTGAGACTAATGAAAGTAAGGGGTGTGGTTATGTGACACTGGGATCTATATACTCAGCAAGAAATGCAGTTGCTGCATTGGATGGATCAGATGTTGGTGGGCGCGAATTGCGGGTTAGATTTTCAATTGAGATTAACTCTAAAAGGAGGAGTTTTAATAAAATGAACTCTTCCACCAAGAGAATTTCATACTATGAATCTCCTCATAAGTTGTATGTTGGCAATCTTGCTAAGACTGTTAGACCCGAACAGTTGAGAGATCTCTTTATCAGATTTGGAAATGTAGTTAGTGCAAGAGTATTGCATGATTTTAAACAAGGGAACAGCCGAGTCTATGCCTTTCTCTCCTTTCAATCAGAGGCAGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTTTATGGTCGTACACTAATCGTTAAAGAGGGTGTAGAGAGGACTGAGCCTTAA 846 0.4267 MRPNSNTLLHTHTFVTLTPSSSYSSLKLCKPQVKRFVLHFAYPKRSRTSLEPSSSSFSPLRKTREVVEEYVYPPQNDDVLEEEEEEEEEKKKLGKACEVYVCNLPRSCDAAYLLDMFRPYGTILSVEVCRNAETNESKGCGYVTLGSIYSARNAVAALDGSDVGGRELRVRFSIEINSKRRSFNKMNSSTKRISYYESPHKLYVGNLAKTVRPEQLRDLFIRFGNVVSARVLHDFKQGNSRVYAFLSFQSEAERDAAMSLNGTEFYGRTLIVKEGVERTEP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00580 281 Gene3D - 181 280 IPR012677 -
Pumo7g00580 281 PANTHER OS02G0815200 PROTEIN 41 273 - -
Pumo7g00580 281 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 49 180 - -
Pumo7g00580 281 SUPERFAMILY RNA-binding domain, RBD 197 278 IPR035979 GO:0003676
Pumo7g00580 281 Coils Coil 76 96 - -
Pumo7g00580 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 277 IPR000504 GO:0003723
Pumo7g00580 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Pumo7g00580 281 SUPERFAMILY RNA-binding domain, RBD 96 187 IPR035979 GO:0003676
Pumo7g00580 281 Gene3D - 43 180 IPR012677 -
Pumo7g00580 281 FunFam 30S ribosomal protein 2, chloroplastic 187 275 - -
Pumo7g00580 281 SMART rrm1_1 98 171 IPR000504 GO:0003723
Pumo7g00580 281 SMART rrm1_1 201 273 IPR000504 GO:0003723
Pumo7g00580 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 169 IPR000504 GO:0003723
Pumo7g00580 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 270 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00580 Pumo-Chr7 9272275 9274864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00580 11 280 Eukaryotic Initiation Factors Gene Family AT1G22760 26.937 6.01e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00580 - - gmx:100792560 435.647