Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00574 ATGATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCTTTGGAGACCCCTTGGGAGTGAATTGTTTTGACCAAGTTCTGGTGGATGAAGAAAGCCTGAGACTAGAAGAGGAAGAGCAGCTTCTGATATCAAGTTTAGAGGACAACATGCCATTCCTTCAGATGCTTCAGAGTGTGGAGTCCCCACAATTTTTCCCTTTGAAAGAGCCAAACTTTCAAACACTTCTGAGGCTGCAGCACATGAAGAAGCCATGGGAGGGAATAGCCTACATTCCAAGAATGGAAGCACAAGTGCAAGCAGCATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCGGTGAAGTCAGAAAGCAATGAGCTCCAGCACCCTCTTTCAATTTCATGTGTTGAGAAAGGGAACTATGAGTGCAACCAGGAACCACAGAAAGCTTCACAATCATGCCCCAAATCTCAGCCAGCAGCCACAAGGGAAAGGAGAAAGAGAAAGAGAACAAGGCCTAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGACGCCAAATGAATGACCACCTCAGTGTTCTAAGGTCCCTCATGCCCCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGTGGTGGTTCTTCTTCCAGCATGTTGTGTAAGCCACCACCGCCATCATCATTATCATCACCACATGGTTATGGAATGAGGTCATCAGCTTGTGAGGAAGGGAACTGTGGGGATGAGGTGAAGGCAGAAAACAAGTCAGAGGCAGCAGACATAAAAGTGACCTTGATTCAAACCCATGTGAACTTGACAATTGAGTGCCAAAGGAGGCCAGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTGTACTCCCTCAGTCTCAAGATTGAAGAAGATTGCAAGCTATGTTCAGCGAGTGACATTGCAGAAGCAGTTCATCAAATATTCAGCTTCATTAATGGTAGCTAG 1152 0.467 MMERLQGPLNSCFFGDPLGVNCFDQVLVDEESLRLEEEEQLLISSLEDNMPFLQMLQSVESPQFFPLKEPNFQTLLRLQHMKKPWEGIAYIPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSISCVEKGNYECNQEPQKASQSCPKSQPAATRERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSSMLCKPPPPSSLSSPHGYGMRSSACEEGNCGDEVKAENKSEAADIKVTLIQTHVNLTIECQRRPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLSLKIEEDCKLCSASDIAEAVHQIFSFINGS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00574 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 232 IPR011598 GO:0046983
Pumo7g00574 383 PANTHER TRANSCRIPTION FACTOR FAMA 121 377 IPR044283 GO:0003700|GO:0010052
Pumo7g00574 383 MobiDBLite consensus disorder prediction 244 279 - -
Pumo7g00574 383 Gene3D - 172 253 IPR036638 GO:0046983
Pumo7g00574 383 Pfam Helix-loop-helix DNA-binding domain 182 233 IPR011598 GO:0046983
Pumo7g00574 383 CDD ACT 312 376 - -
Pumo7g00574 383 SMART finulus 187 238 IPR011598 GO:0046983
Pumo7g00574 383 FunFam Basic helix-loop-helix transcription factor 172 247 - -
Pumo7g00574 383 CDD bHLH_AtFAMA_like 184 257 - -
Pumo7g00574 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 249 IPR036638 GO:0046983
Pumo7g00574 383 Coils Coil 229 249 - -
Pumo7g00574 383 MobiDBLite consensus disorder prediction 145 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00574 Pumo-Chr7 9189381 9193089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00574 40 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 41.193 3.80e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo7g00574 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00574 - - gmx:100789928 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00574 7 9189381 9193089 Pumo7g00574 7 9189381 9193089 ECH