Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00564 ATGTTTGATAAAGTTGTGACACCAAGTGATGTGGGGAAGCTGAACCGGTTGGTGATACCAAAGCAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAGCCAATGAGAAGGGGCTGTTGCTCAATTTTGAGGACAGGAATGGCAAGTTGTGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCAGCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTTCATAGATTGGAGGAGAAGGCCTGATCATCACCATCACCATCACCATCATGGCCCTGACCCTTCAGCCACACTCTTCACACCTTTCTTTCTTCCCAATCAGCCTCACTTAATGTCCATCAGATGGGGTGCCACTGGCAGATTGTACTCCCTCCCTTCCCCAACCCCACCACGCCACCATGACCATTTGCAACAACAACAACAACACCTCAATTACAACCCCATGTATCATCCCTTTCATCACCATGGTGCTGGAAGTGGAAATGGTACTCATCACTACAACAACTATCATGAGATGAGTAGTACTACTTCAGGATCTGGCTCAGTCTTTTACCTCAGGTCAACACCCCCATCAATGCCATTGGCTGATCACCAAACCTTGAACACAAGGCAACAACAGCAACAACAACAAGAGGGAGGCAATGTTTCTCTTTCCCCTATGATCATTGATTCTGTTCCAGTTGCTCACCACCTCCATCATCAACACCATGGTGGCAGCAAGAGTGGTTCTAGTAGTACTAGTACTAGTCCTAGCACTGCAGGCAAAAGACTAAGGCTATTTGGGGTCAACATGGAATGTGCTTCTTCAACATCAGAAGATCCCAAATGCTTCAGCTTGTTGTCCTCATCTTCAATGGCACATGTCACAATGGCTAATTCCAATTCACTTCCCACTTCTTCACTACCACCACTTCAGCTTTTGAGGGAAGACACACTTTCATCATCATCAGCAAGGTTTGGGGATCAGAGAGGAGGGGAACCTTCAATGCTTTTTGATCTGGACCCTTCTTTGCAATACCGGCAGTGA 1104 0.4701 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLFIDWRRRPDHHHHHHHHGPDPSATLFTPFFLPNQPHLMSIRWGATGRLYSLPSPTPPRHHDHLQQQQQHLNYNPMYHPFHHHGAGSGNGTHHYNNYHEMSSTTSGSGSVFYLRSTPPSMPLADHQTLNTRQQQQQQQEGGNVSLSPMIIDSVPVAHHLHHQHHGGSKSGSSSTSTSPSTAGKRLRLFGVNMECASSTSEDPKCFSLLSSSSMAHVTMANSNSLPTSSLPPLQLLREDTLSSSSARFGDQRGGEPSMLFDLDPSLQYRQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00564 367 SMART B3_2 2 107 IPR003340 GO:0003677
Pumo7g00564 367 Pfam B3 DNA binding domain 2 106 IPR003340 GO:0003677
Pumo7g00564 367 MobiDBLite consensus disorder prediction 264 279 - -
Pumo7g00564 367 CDD B3_DNA 1 89 IPR003340 GO:0003677
Pumo7g00564 367 ProSiteProfiles B3 DNA-binding domain profile. 2 107 IPR003340 GO:0003677
Pumo7g00564 367 MobiDBLite consensus disorder prediction 213 240 - -
Pumo7g00564 367 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 299 IPR044800 GO:0003700
Pumo7g00564 367 Gene3D - 1 117 IPR015300 -
Pumo7g00564 367 FunFam B3 domain-containing protein 1 116 - -
Pumo7g00564 367 MobiDBLite consensus disorder prediction 339 367 - -
Pumo7g00564 367 MobiDBLite consensus disorder prediction 256 279 - -
Pumo7g00564 367 SUPERFAMILY DNA-binding pseudobarrel domain 1 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00564 Pumo-Chr7 8934874 8935977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00564 1 295 RAV Transcription Factor Family AT2G46870 47.841 9.04e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo7g00564 B3 1.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00564 K09287 - gmx:100778733 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g00564 7 8934874 8935977 Pumo7g00564 7 8934874 8935977 ECH