Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g00562 ATGTTGGGGGAGAGGGAAGCTGGCGCGACGGGAGCAATGGCGCGATGGGAGCGGTGGCTCGGTGGGAACAGTGACGCGATTACACTTCAACAAGCAATGGGTAGCCCAACTTCAATGCCTGTGGGATACAGATTTCATCCAACTGATGAAGAACTTGTGGATCACTACTTGAAGCAGAAGTTGCTTGGTAATGAGTCCACAGAGGATGTGCATAGTGTCATAGCTGAGATTGATGTTTGCAAGTTTGAGCCTTGGGACTTACCAGCATTTTCCAAGGTAAAATCAGATGATCAGGAATGGTTCTTCTTCAGTCCTCTTGGTTTGAAGTTCGCAAAGGACACAAGGAATAGGTGTAACAGGAAAACCAAAGCTGGGTTCTGGAAGCCCACTGGTAAAGACCGTAAAATTAAGACCAGAGGCACCAACAATGTCATTGGCACCAAGAAGACTCTGGTTTTCTACAAGGGTCGTAGTACTCATGCTGTCAAGACCAATTGGGTCATTCACGAATATCATGCAGTTACCTTTCCTGATGACAAGAGAGGTTTTGTCTTGTGTCGCTTAATCAACAAAGCTGAGAAAAAAGCAGAAGGGGGAACTGATACATTGATACATGATGAAGGGAAGCCAAGTAGCCATATTGCTGCTGACTTTGAAAACCAAACTGAGGATAGTTTTCCAAATCTATGTACTTTGTCAGAAACTGATGAAGGGGAGCCAAGTAGCCATATTGCTGCTGACTTTGAAAACCAAGAAACTGAGGATAGTATTCCAAATGTATATACATTGCCAGAAGTTGATTTGGAATCAATCTTTCCAACACCTCCTCAGGCAGAGGAATATGATGTGCCCTCACTACAACAGTCTTCAATTGTCACTGAACAGGACCCATCTTCCCAAGGTTCCTTGCTTCCCAATGCCTACTTTGGGGAGGAAAACAGCATTAAGCATACTCCATTGGATACCATTGAAGAGGAAGACCATCTTGATAATATATATATTGATAAGTTCTTGAATGAAATTTTAGCTGGCGAGGATGCTTTTAACGGTAATGAAACAATACCTGCTCTTGTTATAGAAGCAATACCTGTTTGA 1095 0.432 MLGEREAGATGAMARWERWLGGNSDAITLQQAMGSPTSMPVGYRFHPTDEELVDHYLKQKLLGNESTEDVHSVIAEIDVCKFEPWDLPAFSKVKSDDQEWFFFSPLGLKFAKDTRNRCNRKTKAGFWKPTGKDRKIKTRGTNNVIGTKKTLVFYKGRSTHAVKTNWVIHEYHAVTFPDDKRGFVLCRLINKAEKKAEGGTDTLIHDEGKPSSHIAADFENQTEDSFPNLCTLSETDEGEPSSHIAADFENQETEDSIPNVYTLPEVDLESIFPTPPQAEEYDVPSLQQSSIVTEQDPSSQGSLLPNAYFGEENSIKHTPLDTIEEEDHLDNIYIDKFLNEILAGEDAFNGNETIPALVIEAIPV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g00562 364 SUPERFAMILY NAC domain 33 191 IPR036093 GO:0003677|GO:0006355
Pumo7g00562 364 Pfam No apical meristem (NAM) protein 40 172 IPR003441 GO:0003677|GO:0006355
Pumo7g00562 364 Gene3D NAC domain 48 196 IPR036093 GO:0003677|GO:0006355
Pumo7g00562 364 ProSiteProfiles NAC domain profile. 39 191 IPR003441 GO:0003677|GO:0006355
Pumo7g00562 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 38 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g00562 Pumo-Chr7 8898977 8902192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g00562 27 191 NAC Transcription Factor Family AT1G33060 50.000 2.47e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo7g00562 NAM 4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g00562 - - ccaj:109803958 478.789